Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_B12
         (1281 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    29   1.8  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    27   7.4  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    27   7.4  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    26   9.7  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    26   9.7  

>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 496 VIGEWSSPCGTPKSPILSASQ*SHRIP 416
           VIG  SSP G P SP + A+Q + ++P
Sbjct: 354 VIGNQSSPTGIPASPNVRATQIATQVP 380


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = +2

Query: 176 DTNAYLSALTPKFYVALTGTSSLISGLILIFEWWYFRTYGTSFI 307
           D +AY   L P  +  +     +I+  +    W Y +++G ++I
Sbjct: 12  DYDAYEGTLDPASFFRINKQEEIIASTVCEIGWEYSKSFGNAYI 55


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 333 PRCDSDTCSINEVPYVLKYHHSKIRMSPDIKDEVPVN 223
           P  +  TC   E  Y +K  H K+   P IK  +P++
Sbjct: 220 PDINDSTCLTKEARYFVKEQHKKLSRKP-IKIGIPID 255


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 232 HFVFDIRTHSYFRMVVF*NIRYLIYRTS 315
           HF+F + T  YF +V   N+ +  Y++S
Sbjct: 604 HFIFSVFTFIYFSLVPLNNLFHRAYKSS 631


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 125 FLFWYHLVFSNKLN*LVGATFSTF 54
           +LF  H++F N+L  L G T S+F
Sbjct: 591 YLFSLHIIFHNELESLCGITQSSF 614


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,795,178
Number of Sequences: 5004
Number of extensions: 51356
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 697499478
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)