Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_B11
         (1279 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    29   1.8  
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    29   1.8  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    29   1.8  
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    27   4.2  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   4.2  
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    26   9.7  

>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 738 GDRVLCAPIETLPICNKDIVMAQQHIIESEEF 833
           G   LC  + T+  C K+I++  +H+  S++F
Sbjct: 497 GTGTLCETLLTVEACTKNIILPNKHVDASQKF 528


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = -1

Query: 754 HRTLSPTSGWFSNNFKKSILMLKY 683
           HRTLS T GWF N F  S   L Y
Sbjct: 239 HRTLSSTKGWF-NGFAGSSATLTY 261


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
 Frame = +3

Query: 444 INHKRKSSLHKDR*REFRLDYYILISNENCIVRYLPTSAAQHQLK-*INGKLAEYTMILE 620
           +N K+K  +++ +  E + +    ISN   +   L T AA+ +     N +L+E    L+
Sbjct: 521 LNEKKKHEVYESQLNELKGELQTEISNSEHLSSQLSTLAAEKEAAVATNNELSESKNSLQ 580

Query: 621 YILK-FHLDDCFNVLSEKDN-LGYFSIKIDFLKLFENHPDV 737
            +   F      +V+  K+N   + S+   F KL E+H ++
Sbjct: 581 TLCNAFQEKLAKSVMQLKENEQNFSSLDTSFKKLNESHQEL 621


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 960 KHPRSTFLGKLFCVTPDXQVNHKIWHEHSSLRKHILI 850
           K PR+ FL  L+ + P   V    +HE   +  H+L+
Sbjct: 116 KDPRAIFLSALYLIDPIRLVTSFNYHERIVVNSHMLL 152


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 7/28 (25%), Positives = 19/28 (67%)
 Frame = -3

Query: 842 CIFKFLRFYNVLLGHHYIFIAYGQGFNG 759
           C+ + LR+++ +LGH ++++ + +   G
Sbjct: 201 CVLQVLRYFHRILGHLWLYVGFFESCTG 228


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 954  DVFKVXGTVVRVTSPNVGYXXKLSVECN 1037
            D F + GT+V +   NV Y    + +CN
Sbjct: 456  DYFSLKGTIVYIRKKNVSYPACPAADCN 483


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,237,778
Number of Sequences: 5004
Number of extensions: 82282
Number of successful extensions: 192
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 695512300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)