Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_B11
         (1279 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68301-4|CAA92623.2|  536|Caenorhabditis elegans Hypothetical pr...    30   4.0  
U00033-4|AAC48305.2|  348|Caenorhabditis elegans Serpentine rece...    29   7.1  
AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.      29   9.3  
AF003390-2|AAP31432.1|  341|Caenorhabditis elegans Hypothetical ...    29   9.3  
AF003390-1|AAB54271.2|  473|Caenorhabditis elegans Hypothetical ...    29   9.3  
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    29   9.3  

>Z68301-4|CAA92623.2|  536|Caenorhabditis elegans Hypothetical
           protein W01B6.5 protein.
          Length = 536

 Score = 29.9 bits (64), Expect = 4.0
 Identities = 30/109 (27%), Positives = 42/109 (38%), Gaps = 2/109 (1%)
 Frame = +3

Query: 666 EKDNLGYFSIKIDFLKLFENH--PDVGDRVLCAPIETLPICNKDIVMAQQHIIESEEFKN 839
           E+ N G    +    KL  N   PDV DR+  +       C KD    +  I +   F  
Sbjct: 53  ERPNCGKTKNETSGKKLRSNDVSPDVKDRLQLSEHGPSKTCIKDFQWLEDFITKMPCFHG 112

Query: 840 TVPKLEYVFVKKNVHARFYGLPVXPELHRTVSLKM*IWDVFKVXGTVVR 986
            + + + + V KNV        V P  H    +K    DV KV G + R
Sbjct: 113 FIGREDLMSVLKNVGDFLIRTSVQPNKHEVEKMKKNQADV-KVLGNLSR 160


>U00033-4|AAC48305.2|  348|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 7 protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 634 NFNIYSKIIVYSASFPLIYF 575
           NF IY  I+++S+ FPL YF
Sbjct: 26  NFQIYQLIMLFSSLFPLTYF 45


>AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.
          Length = 1751

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 741 DRVLCAPIET-LPICNKDIVMAQQHIIESEEFKNTVPKLEYVFVKKNVHARFYGLPVXPE 917
           + +L  P++       K + M Q+ I E +++   +PK +  F +   H    G PV PE
Sbjct: 432 EHILSRPLDLDATDAKKTVTMLQKLISEHQKYMEDLPKRQEDFEEAVKHGGLGGRPVAPE 491


>AF003390-2|AAP31432.1|  341|Caenorhabditis elegans Hypothetical
           protein R155.1b protein.
          Length = 341

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +3

Query: 501 DYYILISNENCIVRYLPTSAAQHQLK*INGKLAEYTMILEYILKFH 638
           DY  ++ + NC       +    +L+ +N KLA + + L Y+  +H
Sbjct: 174 DYNSVVESFNCGTNTFAKNHIHRRLRWVNNKLASHVITLSYLAIWH 219


>AF003390-1|AAB54271.2|  473|Caenorhabditis elegans Hypothetical
           protein R155.1a protein.
          Length = 473

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +3

Query: 501 DYYILISNENCIVRYLPTSAAQHQLK*INGKLAEYTMILEYILKFH 638
           DY  ++ + NC       +    +L+ +N KLA + + L Y+  +H
Sbjct: 306 DYNSVVESFNCGTNTFAKNHIHRRLRWVNNKLASHVITLSYLAIWH 351


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
           anchorage protein1 protein.
          Length = 8545

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 741 DRVLCAPIET-LPICNKDIVMAQQHIIESEEFKNTVPKLEYVFVKKNVHARFYGLPVXPE 917
           + +L  P++       K + M Q+ I E +++   +PK +  F +   H    G PV PE
Sbjct: 432 EHILSRPLDLDATDAKKTVTMLQKLISEHQKYMEDLPKRQEDFEEAVKHGGLGGRPVAPE 491


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,309,970
Number of Sequences: 27780
Number of extensions: 457489
Number of successful extensions: 928
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3568584636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)