Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_B09
(1338 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 35 0.13
01_05_0490 + 22672241-22674679 29 0.30
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 26 0.50
09_01_0016 - 376742-376883,377973-378964 25 2.0
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 25 2.5
01_07_0021 - 40533864-40534583,40534779-40534814,40534909-405350... 25 2.5
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 35.1 bits (77), Expect = 0.13
Identities = 21/61 (34%), Positives = 22/61 (36%)
Frame = +3
Query: 648 PKXPXPPKXXKKXXPRXGGENPXXKKKXPPXXHKKPPGXXPXGGXGXXKKXPPFXPWERG 827
P P PPK P G P K PP K P P G K PP P +G
Sbjct: 326 PPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPP-PPPPKG 384
Query: 828 G 830
G
Sbjct: 385 G 385
Score = 29.5 bits (63), Expect = 6.3
Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 1/53 (1%)
Frame = +3
Query: 648 PKXPXPPKXXKKXXPRXGGENPXXKKKXPPXXHK-KPPGXXPXGGXGXXKKXP 803
PK P PP K P + P PP K PP P GG P
Sbjct: 341 PKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPPAAP 393
>01_05_0490 + 22672241-22674679
Length = 812
Score = 28.7 bits (61), Expect(2) = 0.30
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -3
Query: 463 PPXTQNPFXRGXGVFFFXXXXPPPPPP 383
PP Q PF V ++ PPP PP
Sbjct: 669 PPQQQPPFYPRRAVVYYTYPLPPPSPP 695
Score = 23.8 bits (49), Expect(2) = 0.30
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -3
Query: 400 PPPPPPP 380
PPPPPPP
Sbjct: 700 PPPPPPP 706
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 26.2 bits (55), Expect(2) = 0.50
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -3
Query: 463 PPXTQNPFXRGXGVFFFXXXXPPPPPPP 380
PP P R G PPPPPPP
Sbjct: 693 PPPPLPPANRTNGPGVPSAPPPPPPPPP 720
Score = 25.4 bits (53), Expect(2) = 0.50
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -3
Query: 400 PPPPPPPXXXKXN 362
PPPPPPP + N
Sbjct: 713 PPPPPPPPANRSN 725
Score = 24.6 bits (51), Expect(2) = 3.1
Identities = 10/28 (35%), Positives = 12/28 (42%)
Frame = -3
Query: 463 PPXTQNPFXRGXGVFFFXXXXPPPPPPP 380
PP ++ G PPPPPPP
Sbjct: 669 PPPPRSSSRTPTGAATSSKGPPPPPPPP 696
Score = 24.2 bits (50), Expect(2) = 3.1
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = -3
Query: 400 PPPPPPPXXXKXN 362
PPPPPPP N
Sbjct: 689 PPPPPPPPLPPAN 701
>09_01_0016 - 376742-376883,377973-378964
Length = 377
Score = 25.0 bits (52), Expect(2) = 2.0
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = -3
Query: 400 PPPPPPPXXXKXN 362
PPPPPPP + N
Sbjct: 61 PPPPPPPPPPQQN 73
Score = 24.6 bits (51), Expect(2) = 2.0
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 415 FXXXXPPPPPPP 380
F PPPPPPP
Sbjct: 57 FVAPPPPPPPPP 68
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 24.6 bits (51), Expect(2) = 2.5
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -3
Query: 418 FFXXXXPPPPPPP 380
++ PPPPPPP
Sbjct: 122 YYGHPPPPPPPPP 134
Score = 24.6 bits (51), Expect(2) = 2.5
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -3
Query: 400 PPPPPPPXXXK 368
PPPPPPP K
Sbjct: 127 PPPPPPPPPFK 137
>01_07_0021 -
40533864-40534583,40534779-40534814,40534909-40535048,
40535837-40535922,40536430-40536653,40536770-40536865,
40538766-40538833,40539945-40540055,40540799-40540955
Length = 545
Score = 24.6 bits (51), Expect(2) = 2.5
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -3
Query: 460 PXTQNPFXRGXGVFFFXXXXPPPPPPP 380
P T F G F+ PPPPPP
Sbjct: 513 PNTPPGFQGLAGPFYGPPYPAPPPPPP 539
Score = 24.6 bits (51), Expect(2) = 2.5
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = -3
Query: 400 PPPPPPPXXXK 368
PPPPPPP K
Sbjct: 535 PPPPPPPMNRK 545
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,129,723
Number of Sequences: 37544
Number of extensions: 424050
Number of successful extensions: 8805
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7086
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4201914372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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