Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_B08
         (1267 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr...    30   0.78 
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   4.2  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   7.3  
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom...    26   9.6  

>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 311

 Score = 29.9 bits (64), Expect = 0.78
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = -3

Query: 440 YVFL*TVLIYFEICSTM----LQCFSPMSIEHAGVTHTPRRVMTYASVVFAHA 294
           Y  L  + I+F I STM    LQCFSP S+    V   P + +T+  +V  HA
Sbjct: 38  YASLILLCIFFTIFSTMSHPSLQCFSPTSL----VGAQPLKNLTHLIIVAGHA 86


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +1

Query: 652 GLTKHDNKIVFVNVIGVTLMFAYTAVF---YIFTFKKSSVLKQIFAMVAFIIFTLG 810
           GL  +   I F  + G+    ++T  +   Y F+F+   +L  I A ++ +  TLG
Sbjct: 69  GLEVNTMSIPFYLIFGIFAFVSFTTQYLGIYSFSFQPFQLLNVIIASLSMVFITLG 124


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 12/49 (24%), Positives = 22/49 (44%)
 Frame = +1

Query: 676 IVFVNVIGVTLMFAYTAVFYIFTFKKSSVLKQIFAMVAFIIFTLGYVSV 822
           +VF+N++    M  Y  +FY + F    V   I  ++  I+  L    +
Sbjct: 348 LVFINILLYICMVGYPLIFYQYGFNAGEVGLAILGILVGILLGLALTPI 396


>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 586 TAEASPLPFICGVISAALWILYGLTKHDNKIV 681
           T ++SPLP I  +++  L IL+G    DN  V
Sbjct: 228 TFKSSPLPSIPELVTEMLSILFGEKNPDNSFV 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,303,439
Number of Sequences: 5004
Number of extensions: 87330
Number of successful extensions: 183
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 687563588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)