Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_B08
(1267 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR457148-1|CAG33429.1| 221|Homo sapiens LOC55974 protein. 53 3e-06
BC005943-1|AAH05943.1| 221|Homo sapiens recombination activatin... 53 3e-06
AL691442-8|CAI15323.1| 221|Homo sapiens recombination activatin... 53 3e-06
AF126023-1|AAF17232.1| 221|Homo sapiens stromal cell protein pr... 52 3e-06
BC009621-1|AAH09621.1| 167|Homo sapiens RAG1AP1 protein protein. 42 0.004
AL691442-7|CAI15322.1| 167|Homo sapiens recombination activatin... 42 0.004
AF233523-1|AAF65317.1| 3674|Homo sapiens beta V spectrin protein. 33 1.7
AK125484-1|BAC86178.1| 148|Homo sapiens protein ( Homo sapiens ... 33 2.9
>CR457148-1|CAG33429.1| 221|Homo sapiens LOC55974 protein.
Length = 221
Score = 52.8 bits (121), Expect = 3e-06
Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 1/142 (0%)
Frame = +1
Query: 490 IKDFVSSVAVTITILQFLSGILVCKQYVVNRTTAEASPLPFICGVISAALWILYGLTKHD 669
+ + V T+ F +G+ + + R+ LPF+ ++ W+ YG K D
Sbjct: 7 LDSLIYGACVVFTLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSYGALKGD 66
Query: 670 NKIVFVNVIGVTLMFAYTAVFYIFTFKKSSVLKQIFAMVAFIIFTLGYVSVEDDNEXXXX 849
++ VN +G L Y + + +K VL Q ++ ++ GY + N
Sbjct: 67 GILIVVNTVGAALQTLYILAYLHYCPRKRVVLLQTATLLGVLLLGYGYFWLLVPNPEARL 126
Query: 850 XXXXXACS-FTLLTIASPLSKL 912
CS FT+ SPL+ L
Sbjct: 127 QQLALFCSVFTISMYLSPLADL 148
>BC005943-1|AAH05943.1| 221|Homo sapiens recombination activating
gene 1 activating protein 1 protein.
Length = 221
Score = 52.8 bits (121), Expect = 3e-06
Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 1/142 (0%)
Frame = +1
Query: 490 IKDFVSSVAVTITILQFLSGILVCKQYVVNRTTAEASPLPFICGVISAALWILYGLTKHD 669
+ + V T+ F +G+ + + R+ LPF+ ++ W+ YG K D
Sbjct: 7 LDSLIYGACVVFTLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSYGALKGD 66
Query: 670 NKIVFVNVIGVTLMFAYTAVFYIFTFKKSSVLKQIFAMVAFIIFTLGYVSVEDDNEXXXX 849
++ VN +G L Y + + +K VL Q ++ ++ GY + N
Sbjct: 67 GILIVVNTVGAALQTLYILAYLHYCPRKRVVLLQTATLLGVLLLGYGYFWLLVPNPEARL 126
Query: 850 XXXXXACS-FTLLTIASPLSKL 912
CS FT+ SPL+ L
Sbjct: 127 QQLGLFCSVFTISMYLSPLADL 148
>AL691442-8|CAI15323.1| 221|Homo sapiens recombination activating
gene 1 activating protein 1 protein.
Length = 221
Score = 52.8 bits (121), Expect = 3e-06
Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 1/142 (0%)
Frame = +1
Query: 490 IKDFVSSVAVTITILQFLSGILVCKQYVVNRTTAEASPLPFICGVISAALWILYGLTKHD 669
+ + V T+ F +G+ + + R+ LPF+ ++ W+ YG K D
Sbjct: 7 LDSLIYGACVVFTLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSYGALKGD 66
Query: 670 NKIVFVNVIGVTLMFAYTAVFYIFTFKKSSVLKQIFAMVAFIIFTLGYVSVEDDNEXXXX 849
++ VN +G L Y + + +K VL Q ++ ++ GY + N
Sbjct: 67 GILIVVNTVGAALQTLYILAYLHYCPRKRVVLLQTATLLGVLLLGYGYFWLLVPNPEARL 126
Query: 850 XXXXXACS-FTLLTIASPLSKL 912
CS FT+ SPL+ L
Sbjct: 127 QQLGLFCSVFTISMYLSPLADL 148
>AF126023-1|AAF17232.1| 221|Homo sapiens stromal cell protein
protein.
Length = 221
Score = 52.4 bits (120), Expect = 3e-06
Identities = 33/142 (23%), Positives = 58/142 (40%), Gaps = 1/142 (0%)
Frame = +1
Query: 490 IKDFVSSVAVTITILQFLSGILVCKQYVVNRTTAEASPLPFICGVISAALWILYGLTKHD 669
+ + V T+ F +G+ + + R+ LPF+ ++ W+ YG K D
Sbjct: 7 LDSLIYGACVVFTLGMFSAGLSDLRHMRMTRSVDNVRFLPFLTTEVNNLGWLSYGALKGD 66
Query: 670 NKIVFVNVIGVTLMFAYTAVFYIFTFKKSSVLKQIFAMVAFIIFTLGYVSVEDDNEXXXX 849
++ VN +G L Y + + +K VL Q ++ ++ GY + N
Sbjct: 67 GILIVVNTVGAALQTLYILAYLHYCPRKRVVLLQTATLLGVLLLGYGYFWLLVPNPEARL 126
Query: 850 XXXXXACS-FTLLTIASPLSKL 912
CS FT+ SPL+ L
Sbjct: 127 QQLGLFCSVFTISMYLSPLADL 148
>BC009621-1|AAH09621.1| 167|Homo sapiens RAG1AP1 protein protein.
Length = 167
Score = 42.3 bits (95), Expect = 0.004
Identities = 20/93 (21%), Positives = 41/93 (44%)
Frame = +1
Query: 490 IKDFVSSVAVTITILQFLSGILVCKQYVVNRTTAEASPLPFICGVISAALWILYGLTKHD 669
+ + V T+ F +G+ + + R+ LPF+ ++ W+ YG K D
Sbjct: 7 LDSLIYGACVVFTLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSYGALKGD 66
Query: 670 NKIVFVNVIGVTLMFAYTAVFYIFTFKKSSVLK 768
++ VN +G L Y + + +K+ V++
Sbjct: 67 GILIVVNTVGAALQTLYILAYLHYCPRKAKVIQ 99
>AL691442-7|CAI15322.1| 167|Homo sapiens recombination activating
gene 1 activating protein 1 protein.
Length = 167
Score = 42.3 bits (95), Expect = 0.004
Identities = 20/93 (21%), Positives = 41/93 (44%)
Frame = +1
Query: 490 IKDFVSSVAVTITILQFLSGILVCKQYVVNRTTAEASPLPFICGVISAALWILYGLTKHD 669
+ + V T+ F +G+ + + R+ LPF+ ++ W+ YG K D
Sbjct: 7 LDSLIYGACVVFTLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSYGALKGD 66
Query: 670 NKIVFVNVIGVTLMFAYTAVFYIFTFKKSSVLK 768
++ VN +G L Y + + +K+ V++
Sbjct: 67 GILIVVNTVGAALQTLYILAYLHYCPRKAKVIQ 99
>AF233523-1|AAF65317.1| 3674|Homo sapiens beta V spectrin protein.
Length = 3674
Score = 33.5 bits (73), Expect = 1.7
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +2
Query: 266 FERILSVCGPRERTLHLHRS*RDGAYVSLQHVQCSLVKSIVALWSKFQNKSEQ 424
F R+LS GPR L H + H ++SI A W++ Q +SEQ
Sbjct: 1253 FGRLLSTLGPRAEALRAHGEKLVQSQHPAAHTVREQLQSIQAQWTRLQGRSEQ 1305
>AK125484-1|BAC86178.1| 148|Homo sapiens protein ( Homo sapiens
cDNA FLJ43495 fis, clone PEBLM2000338. ).
Length = 148
Score = 32.7 bits (71), Expect = 2.9
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 714 CLYSCVLHLHI*KVISFETDFCYGCIYNIHTWICVC 821
C+Y C+ ++H+ + + + Y C+ IH +CVC
Sbjct: 12 CIYVCI-YIHVFVYVCYIYLYVYVCVIYIHVCVCVC 46
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,875,256
Number of Sequences: 237096
Number of extensions: 3081279
Number of successful extensions: 5028
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5028
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 18110209670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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