Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_B08
         (1267 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    25   1.8  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    25   1.8  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    25   1.8  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    23   4.3  
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    23   7.5  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   7.5  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   7.5  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   7.5  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   7.5  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   7.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   7.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   9.9  

>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -1

Query: 274 PFKLFNPDFAG*PSEHHGFSGTW--XFMMTWNRSC 176
           P KL+ PD     S   GF GT+    ++T N SC
Sbjct: 65  PNKLWKPDILMYNSADEGFDGTYQTSVVVTHNGSC 99


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -1

Query: 274 PFKLFNPDFAG*PSEHHGFSGTW--XFMMTWNRSC 176
           P KL+ PD     S   GF GT+    ++T N SC
Sbjct: 133 PNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSC 167


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -1

Query: 274 PFKLFNPDFAG*PSEHHGFSGTW--XFMMTWNRSC 176
           P KL+ PD     S   GF GT+    ++T N SC
Sbjct: 133 PNKLWKPDILMYNSADEGFDGTYQTNVVVTHNGSC 167


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 398 SKFQNKSEQFKETRNDTNE 454
           S + +  E+FK+ RN+ NE
Sbjct: 6   SSYSHHDEKFKQLRNEDNE 24


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 750 FKCEDVEHSCIGK 712
           FKCE   +SC+ K
Sbjct: 17  FKCEKCSYSCVNK 29


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -1

Query: 274 PFKLFNPDFAG*PSEHHGFSGTW--XFMMTWNRSC 176
           P KL+ PD     S   GF GT+    ++T + SC
Sbjct: 65  PNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSC 99


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -1

Query: 274 PFKLFNPDFAG*PSEHHGFSGTW--XFMMTWNRSC 176
           P KL+ PD     S   GF GT+    ++T + SC
Sbjct: 65  PNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSC 99


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -1

Query: 274 PFKLFNPDFAG*PSEHHGFSGTW--XFMMTWNRSC 176
           P KL+ PD     S   GF GT+    ++T + SC
Sbjct: 65  PNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSC 99


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -1

Query: 274 PFKLFNPDFAG*PSEHHGFSGTW--XFMMTWNRSC 176
           P KL+ PD     S   GF GT+    ++T + SC
Sbjct: 65  PNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSC 99


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = -1

Query: 274 PFKLFNPDFAG*PSEHHGFSGTW--XFMMTWNRSC 176
           P KL+ PD     S   GF GT+    ++T + SC
Sbjct: 65  PNKLWKPDILMYNSADEGFDGTYQTSVVVTHDGSC 99


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 7.5
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 344 VSLQHVQCSLVKSIVALWSKFQNKSEQFKETR 439
           +S  +    LVK +  L+++F   SE+F++ R
Sbjct: 285 ISSTYSASELVKILNELFARFDQLSERFEQLR 316


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -2

Query: 735 VEHSCIGKHERHTNYIDK 682
           V H+CI  H +   Y+ K
Sbjct: 95  VSHTCIENHLKQLGYVQK 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 290,818
Number of Sequences: 438
Number of extensions: 6261
Number of successful extensions: 40
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43342743
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)