Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_B07
         (1261 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   7.4  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   9.8  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 373 R*PASTLSLCQIQ*RNHGTSLVTFRVNGQQSLYSLL 266
           R P S   L +++  N+G S    R  GQQ+ Y LL
Sbjct: 369 RAPNSETKLAEMR-DNYGISAGLNRTAGQQAAYQLL 403


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 9.8
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
 Frame = +2

Query: 500 TTPCWLRGSDAILNAIKQETNCEVGGNSPCGKFSVSEVECLGACVNA--PMIQVNDDYYE 673
           T P W  G  A L  I  +TN   GG+     +        GAC +A     +++ D  +
Sbjct: 82  TVPRWRNGIPATLTYISLDTN--RGGSPKLTPYPNWAQNKAGACGSAITTAYRIHADSCD 139

Query: 674 DLSVEDTKEI 703
            L V DT  I
Sbjct: 140 RLWVLDTGTI 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 289,609
Number of Sequences: 438
Number of extensions: 6333
Number of successful extensions: 26
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43102617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)