Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_B06
(1293 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 369 e-103
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 216 6e-57
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc... 91 2e-19
SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc... 54 6e-08
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 36 0.012
SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces... 29 1.4
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 29 1.4
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom... 28 3.2
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos... 27 4.3
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5... 27 5.6
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 27 5.6
SPAC589.11 |mug82||translation release factor |Schizosaccharomyc... 27 5.6
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 27 7.5
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 27 7.5
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 369 bits (908), Expect = e-103
Identities = 170/279 (60%), Positives = 230/279 (82%), Gaps = 2/279 (0%)
Frame = +2
Query: 146 SSAIYILDVXGKVLISRNYRGDVDLGVIDKFMPLLMEKEEE-GMLTPLLQTSECTFAYIK 322
+SAI++L++ GKV+ISR+YR D+ + V++KF+PL E EEE G TP L + YI
Sbjct: 2 ASAIFVLNLKGKVIISRDYRADIPMSVVEKFLPLKSEVEEEQGFSTPCLTHEGINYIYIH 61
Query: 323 TNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFG 502
N++Y+++ +K N++ + VFL K+ +V +YFKEL+EESIRDNFV++YELLDE++DFG
Sbjct: 62 HNDVYLLALSKMNSDAMEMLVFLRKMADVFIDYFKELQEESIRDNFVLVYELLDEIMDFG 121
Query: 503 YPQTTDSKILQEYITQEGHKLEMQPKIPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNLL 682
+PQTT++KILQEYITQ + ++ P+A+TNA+SWRSEGI YRKNEVFLDVIESVNL+
Sbjct: 122 FPQTTETKILQEYITQTSNTVKKHAPPPIAMTNAISWRSEGIHYRKNEVFLDVIESVNLI 181
Query: 683 ANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTGRG-KSKSVELEDVKFHQC 859
A ++G V++SEI+G ++++ YLSGMPELRLGLNDKVLFE+ GR K +VE+EDVKFHQC
Sbjct: 182 AAADGTVIQSEILGKVRLKCYLSGMPELRLGLNDKVLFEAAGRTIKGNTVEMEDVKFHQC 241
Query: 860 VRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIXIE 976
VRL+RFENDRTISFIPPDGEF+LMSYR++++V+PLI +E
Sbjct: 242 VRLARFENDRTISFIPPDGEFDLMSYRMSSNVRPLIWVE 280
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 216 bits (527), Expect = 6e-57
Identities = 116/308 (37%), Positives = 175/308 (56%), Gaps = 27/308 (8%)
Frame = +2
Query: 149 SAIYILDVXGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSECTFAYIKTN 328
S ++I ++ G LI + +R D+ V + F ++ + P++ T+ Y K
Sbjct: 3 SGLFIFNLKGDTLICKTFRHDLKKSVTEIFRVAILTNTD--YRHPIVSIGSSTYIYTKHE 60
Query: 329 NLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFGYP 508
+LY+V+ TK N N+ +V FL +++ +T YF +L E +++DN I+ELLDE+ID+G
Sbjct: 61 DLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKDNVSFIFELLDEMIDYGII 120
Query: 509 QTTDSKILQEYIT-------------QEGHKLEMQPKIPMAVTNAVSWRSEGIKYRKNEV 649
QTT+ L ++ + H ++ + +V WR GIKYRKN +
Sbjct: 121 QTTEPDALARSVSITAVKKKGNALSLKRSHSSQLAHTTSSEIPGSVPWRRAGIKYRKNSI 180
Query: 650 FLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFE-STGRGKSKS 826
++D++E +NLL +S GNVLRS++ G +KMR LSGMPE + GLNDK+ F+ KSKS
Sbjct: 181 YIDIVERMNLLISSTGNVLRSDVSGVVKMRAMLSGMPECQFGLNDKLDFKLKQSESKSKS 240
Query: 827 -------------VELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLI 967
V LED +FHQCVRL FEN+ I+FIPPDGE ELMSYR + ++
Sbjct: 241 NNSRNPSSVNGGFVILEDCQFHQCVRLPEFENEHRITFIPPDGEVELMSYRSHENINIPF 300
Query: 968 XIESVXER 991
I + E+
Sbjct: 301 RIVPIVEQ 308
>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 425
Score = 91.5 bits (217), Expect = 2e-19
Identities = 69/272 (25%), Positives = 120/272 (44%), Gaps = 9/272 (3%)
Frame = +2
Query: 152 AIYILDVXGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSE--CTFAYIKT 325
AIY++D G +L+ RG ++ L + P + ++ F ++
Sbjct: 6 AIYLVDTNGALLLQLESRGRTSPITLEHIKNELFRYKLRNEEPPFILHNKNFLIFQELEE 65
Query: 326 NNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFGY 505
+ + TT + + + +IV+V+ +F + N VI +LL E+ID+GY
Sbjct: 66 DVRLCIPTTCDTEPL-YIHDIMRRIVDVVKTFFGGFNASKVEKNVCVIVQLLAEMIDYGY 124
Query: 506 PQTTDSKILQEYITQEGHKLE------MQPKIPMAVTNAVSWRSEGIKYRKNEVFLDVIE 667
+ LQ+ + + +Q P + V WR+ KY NE F+ V+E
Sbjct: 125 ATCMEPNALQDIVPLPSFMNKFMAVTGLQTNTPTLARDTVPWRTAKAKYATNEFFIHVLE 184
Query: 668 SVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTGRGKSKSVELEDVK 847
V+ + NG + + ++ + +SGMP L L L +L +V+
Sbjct: 185 RVSAVYQPNGKLAFGTVKSDMECKCQISGMPLLLLSLR-------------PGTKLGNVR 231
Query: 848 FHQCVRLSRF-ENDRTISFIPPDGEFELMSYR 940
FHQ V L R+ ++ I FIPPDG+F L S++
Sbjct: 232 FHQSVNLKRWKQHPDQIEFIPPDGKFTLASFQ 263
>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 240
Score = 53.6 bits (123), Expect = 6e-08
Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 3/144 (2%)
Frame = +2
Query: 152 AIYILDVXGKVLISRNYRGDVDLGV---IDKFMPLLMEKEEEGMLTPLLQTSECTFAYIK 322
A+ I++ GK +ISR +R + V + F L+ EK + +++ F Y
Sbjct: 5 AVSIVNRGGKAIISRQFREMSRVRVESLLSSFPALVSEKSQN----TTVESDNVRFVYQP 60
Query: 323 TNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFG 502
+ LYIV T +NI L+ + +V+T LEE I + I+ DE G
Sbjct: 61 LDELYIVLITNLQSNILQDIDTLHLLSQVVTSICSSLEEREILEYAFEIFTAFDEATSLG 120
Query: 503 YPQTTDSKILQEYITQEGHKLEMQ 574
Y ++ Y+ E H+ ++Q
Sbjct: 121 YRDNVSLTQIKTYLEMESHEEKIQ 144
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 35.9 bits (79), Expect = 0.012
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = -1
Query: 441 SSSNSLKYSVITSTILYKNTNTSAILAFFFVVDTMYKLLVLI*ANVHSLVCNKGVNIPSS 262
S S ++ T TI T+TS+I+ + V+T+Y+ + + + S++ N I S
Sbjct: 336 SLSTEVEVEYFTKTI----TDTSSIVTYSTGVETLYETETITSSEISSIIYNFSTPISGS 391
Query: 261 SFSIS-KGMNLSITPRSTSPR*FLEMRTLPLTSSM 160
SF K +N + P TS + TLP +S M
Sbjct: 392 SFPDGFKPINPTSFPSLTSSTKKIPSTTLPTSSKM 426
>SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 338
Score = 29.1 bits (62), Expect = 1.4
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 15/108 (13%)
Frame = +2
Query: 575 PKIPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNLLA--------------NSNGNVLRS 712
PK+ NA +W EGI++ K +F +I + L +S G + S
Sbjct: 94 PKLDFVYLNAGAWDLEGIQWLK-AIFSTLINPIQALTHPTFYKETAGRVSNDSLGYIFES 152
Query: 713 EIVGAIKMRVYLSGMPELRLGLNDKVLFESTGRGKSKSVELEDVK-FH 853
+ G ++ L+ + LR + KV+ S+ + KS++ ED++ FH
Sbjct: 153 NVFGHFYLKNRLAELKVLR--SSTKVVLTSSLVAEKKSLDFEDLQCFH 198
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 29.1 bits (62), Expect = 1.4
Identities = 20/99 (20%), Positives = 39/99 (39%)
Frame = +2
Query: 248 LMEKEEEGMLTPLLQTSECTFAYIKTNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFK 427
L+ + + L+ Y + LY N + ++ VE++ +F
Sbjct: 38 LISQRNQKFQANFLEWENSKLVYRRYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFG 97
Query: 428 ELEEESIRDNFVVIYELLDELIDFGYPQTTDSKILQEYI 544
+ E + NF + +LDE+I G ++ K + E I
Sbjct: 98 NVCELDLIFNFYKVSAILDEIILGGEIGESNKKSVLERI 136
>SPBC947.12 |kms2||spindle pole body protein
Kms2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 27.9 bits (59), Expect = 3.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 647 LHSFYILCLRTSTTQHW*PPWVFWAAFQVYD 555
+H FY L +T Q W P++FW +D
Sbjct: 423 IHIFYFLFFHVATIQQW--PFLFWLPSTKFD 451
>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 27.5 bits (58), Expect = 4.3
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = -1
Query: 282 GVNIPSSSFSISKGMNLSITPRSTSPR*FLEMRTLPLTSSMYIAEEDMVKQFLLYFR*IL 103
G I S+ FS+ + + L+ RS SPR FLE+ L I + ++FL +F L
Sbjct: 119 GGKITSAFFSLLQSVLLNHGQRSISPRNFLEI-VQSLNRDFSIDGQCDAQEFLNFFLDKL 177
Query: 102 H 100
H
Sbjct: 178 H 178
>SPBC609.04 |caf5||spermine family transmembrane transporter
Caf5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 281 PLLQTSECTFAYIKTNNLYIVSTTKKNANIALVFVFLYKIV 403
P+L TS F I+ +Y+ +A FVFLYK++
Sbjct: 342 PILFTSVYHFTIIENGLVYLGILVGALITLACYFVFLYKVM 382
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 27.1 bits (57), Expect = 5.6
Identities = 33/150 (22%), Positives = 55/150 (36%), Gaps = 1/150 (0%)
Frame = +2
Query: 437 EESIRDNFVVIYELLDELIDFGYPQTTDSKILQEYITQEGHKLEMQPKIPMAVTNAVSWR 616
E SI VV ELL+ L ++ DS + Y+T G L+ A
Sbjct: 66 ETSIMKLLVVTKELLESLTNWSKGTVNDSAVSSVYVTLIGEFLQTTKSFHEAGIETADLN 125
Query: 617 SEGIKYRK-NEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVL 793
++ R E L+ S + L + NV R ++ ++ Y + + RL + L
Sbjct: 126 DFPLELRSVLEQTLEKTPSSDALETNLPNV-RELVMHLLQSLKYKQSLVKSRLNQSRSNL 184
Query: 794 FESTGRGKSKSVELEDVKFHQCVRLSRFEN 883
+ T V + + +S F N
Sbjct: 185 PQMTREANDNDVNRRNSRGSSQGSISSFRN 214
>SPAC589.11 |mug82||translation release factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 182
Score = 27.1 bits (57), Expect = 5.6
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 52 KIRNLRLSYDNVNYC 96
KI+N RL YDN+N C
Sbjct: 10 KIKNSRLIYDNINKC 24
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 26.6 bits (56), Expect = 7.5
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = -1
Query: 894 MVLSFSKRDN-----LTH*WNFTSSNSTDFDFPLPVLSNKTLSFKPKRNSGIPDKYTLIL 730
+V F K+DN L + F++ ++ F L LS ++ K N GIP+K+ + L
Sbjct: 19 LVSKFVKKDNFSSLRLARAYTFSTRSTAVSQFSLLSLSQRSFQ-SLKINKGIPEKHKIPL 77
Query: 729 IA 724
I+
Sbjct: 78 IS 79
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 26.6 bits (56), Expect = 7.5
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Frame = -1
Query: 849 NFTS-SNSTDFDFPLPVLSNKTLSFKPKRNS-GIPDKYTLILIAPTISLLSTLPFELANK 676
NFTS S+S LS + + +S + +LI+ +P IS T
Sbjct: 520 NFTSASSSLSLTNAKSSLSTPSTTIPTSNSSVSLQTSSSLIISSPIISSSLTATSTSTPA 579
Query: 675 FTDSITSKKTSFFLYFMPSDLHD--TALVT 592
T SIT TS+ +PS D ++L+T
Sbjct: 580 LTHSITPSNTSYTSSLIPSSSTDYSSSLIT 609
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,449,325
Number of Sequences: 5004
Number of extensions: 92841
Number of successful extensions: 258
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 705448190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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