Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_B06
(1293 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 450 e-127
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 450 e-127
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 423 e-118
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 258 5e-69
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 254 8e-68
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 254 1e-67
U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/med... 163 3e-40
U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical pr... 58 1e-08
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr... 43 5e-04
AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, smal... 39 0.007
U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chai... 34 0.19
Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical pr... 33 0.33
Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical pr... 33 0.33
Z36949-2|CAA85416.1| 184|Caenorhabditis elegans Hypothetical pr... 33 0.58
U28971-7|ABC48263.1| 309|Caenorhabditis elegans Hypothetical pr... 33 0.58
AF077533-2|AAP40529.1| 972|Caenorhabditis elegans Hypothetical ... 31 2.3
AF077533-1|AAZ91357.1| 1126|Caenorhabditis elegans Hypothetical ... 31 2.3
AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe... 31 2.3
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr... 30 4.1
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr... 30 4.1
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot... 30 4.1
U53154-6|AAC25855.3| 357|Caenorhabditis elegans Nuclear hormone... 29 9.5
AY204192-1|AAO39196.1| 357|Caenorhabditis elegans nuclear recep... 29 9.5
AY204191-1|AAO39195.1| 357|Caenorhabditis elegans nuclear recep... 29 9.5
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical protein
K11D2.3a protein.
Length = 422
Score = 450 bits (1110), Expect = e-127
Identities = 209/291 (71%), Positives = 250/291 (85%)
Frame = +2
Query: 140 MSSSAIYILDVXGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSECTFAYI 319
M++SA++ILD+ GK +ISRNYRGD+D+ IDKF+ LLMEKEEEG P+L + F +I
Sbjct: 1 MATSAMFILDLKGKTIISRNYRGDIDMTAIDKFIHLLMEKEEEGSAAPVLTYQDTNFVFI 60
Query: 320 KTNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDF 499
K N+Y+VS + N N+ ++ FLYK VEV +EYFK++EEES+RDNFVVIYELLDE++DF
Sbjct: 61 KHTNIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVVIYELLDEMMDF 120
Query: 500 GYPQTTDSKILQEYITQEGHKLEMQPKIPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNL 679
G+PQTT+S+ILQEYITQEG KL P+ PMAVTNAVSWRSEGIKYRKNEVFLDVIESVN+
Sbjct: 121 GFPQTTESRILQEYITQEGQKLISAPRPPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNM 180
Query: 680 LANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTGRGKSKSVELEDVKFHQC 859
LA++NG VL+SEIVG++KMRVYL+GMPELRLGLNDKVLFE +GRGKSKSVELEDVKFHQC
Sbjct: 181 LASANGTVLQSEIVGSVKMRVYLTGMPELRLGLNDKVLFEGSGRGKSKSVELEDVKFHQC 240
Query: 860 VRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIXIESVXERHAHXELN 1012
VRLSRF+ DRTISFIPPDG FELMSYRL T VKPLI IE+ ERH+H ++
Sbjct: 241 VRLSRFDTDRTISFIPPDGAFELMSYRLTTVVKPLIWIETSIERHSHSRVS 291
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 450 bits (1110), Expect = e-127
Identities = 209/291 (71%), Positives = 250/291 (85%)
Frame = +2
Query: 140 MSSSAIYILDVXGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSECTFAYI 319
M++SA++ILD+ GK +ISRNYRGD+D+ IDKF+ LLMEKEEEG P+L + F +I
Sbjct: 1 MATSAMFILDLKGKTIISRNYRGDIDMTAIDKFIHLLMEKEEEGSAAPVLTYQDTNFVFI 60
Query: 320 KTNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDF 499
K N+Y+VS + N N+ ++ FLYK VEV +EYFK++EEES+RDNFVVIYELLDE++DF
Sbjct: 61 KHTNIYLVSACRSNVNVTMILSFLYKCVEVFSEYFKDVEEESVRDNFVVIYELLDEMMDF 120
Query: 500 GYPQTTDSKILQEYITQEGHKLEMQPKIPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNL 679
G+PQTT+S+ILQEYITQEG KL P+ PMAVTNAVSWRSEGIKYRKNEVFLDVIESVN+
Sbjct: 121 GFPQTTESRILQEYITQEGQKLISAPRPPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNM 180
Query: 680 LANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTGRGKSKSVELEDVKFHQC 859
LA++NG VL+SEIVG++KMRVYL+GMPELRLGLNDKVLFE +GRGKSKSVELEDVKFHQC
Sbjct: 181 LASANGTVLQSEIVGSVKMRVYLTGMPELRLGLNDKVLFEGSGRGKSKSVELEDVKFHQC 240
Query: 860 VRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIXIESVXERHAHXELN 1012
VRLSRF+ DRTISFIPPDG FELMSYRL T VKPLI IE+ ERH+H ++
Sbjct: 241 VRLSRFDTDRTISFIPPDGAFELMSYRLTTVVKPLIWIETSIERHSHSRVS 291
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/medium
chain (clathrinassociated complex) protein 1 protein.
Length = 426
Score = 423 bits (1042), Expect = e-118
Identities = 204/292 (69%), Positives = 244/292 (83%), Gaps = 5/292 (1%)
Frame = +2
Query: 140 MSSSAIYILDVXGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSECTFAYI 319
MS S ++ILD+ G V+ISRNYRGDVD+ I+KFMPLL+EKE+EG +P+L ++ YI
Sbjct: 1 MSISGLFILDLKGNVVISRNYRGDVDMSCIEKFMPLLVEKEDEGSASPVLVHQGISYTYI 60
Query: 320 KTNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDF 499
K N+Y+V+ +KKN N+ LV LYKIVEV EYFK LEEE++RDNFV+IYEL DE++DF
Sbjct: 61 KYMNVYLVTISKKNTNVILVLSALYKIVEVFCEYFKTLEEEAVRDNFVIIYELFDEMLDF 120
Query: 500 GYPQTTDSKILQEYITQEGHKLEMQPKIPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNL 679
GYPQTT+SKILQE+ITQ+G++LE + PMAVTNAVSWRSEGIKYRKNEVFLDVIESVN+
Sbjct: 121 GYPQTTESKILQEFITQQGNRLE-TVRPPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNM 179
Query: 680 LANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTG----RGKS-KSVELEDV 844
LAN+ G VLRSEIVG+I+ RV LSGMPELRLGLNDKV F+ +G RG S K VELED+
Sbjct: 180 LANAQGTVLRSEIVGSIRFRVVLSGMPELRLGLNDKVFFQQSGASSRRGNSGKGVELEDI 239
Query: 845 KFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIXIESVXERHAH 1000
KFHQCVRLSRF+++RTISFIPPDGEFELMSYRL T VKPLI +E+ ERHAH
Sbjct: 240 KFHQCVRLSRFDSERTISFIPPDGEFELMSYRLTTQVKPLIWVEAAVERHAH 291
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 258 bits (633), Expect = 5e-69
Identities = 126/290 (43%), Positives = 187/290 (64%), Gaps = 12/290 (4%)
Frame = +2
Query: 155 IYILDVXGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSECTFAYIKTNNL 334
+++ + G+VLISR YR DV +D F ++ ++ + +P+ + +F ++K N+
Sbjct: 5 LFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQ-VRSPVTNMARTSFFHVKRGNV 63
Query: 335 YIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFGYPQT 514
+I + T++N N A+VF FL + + M YF +L EE++++NFV+IYELLDE++DFGYPQ
Sbjct: 64 WICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQN 123
Query: 515 TDSKILQEYITQEGHKL---EMQPKIPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNLLA 685
TD +L+ +ITQ+G + E Q +I VT + WR EGIKYR+NE+FLDVIE VNLL
Sbjct: 124 TDPGVLKTFITQQGVRTATKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVIEYVNLLM 183
Query: 686 NSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTGRGKS--------KSVELED 841
N G VL + + G + M+ YLSGMPE + G+NDK+ E + S +V ++D
Sbjct: 184 NQQGQVLSAHVAGKVAMKSYLSGMPECKFGINDKITIEGKSKPGSDDPNKASRAAVAIDD 243
Query: 842 VKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVK-PLIXIESVXE 988
+FHQCV+L++FE + ISFIPPDGE+ELM YR ++ P I V E
Sbjct: 244 CQFHQCVKLTKFETEHAISFIPPDGEYELMRYRTTKDIQLPFRVIPLVRE 293
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 254 bits (623), Expect = 8e-68
Identities = 126/296 (42%), Positives = 187/296 (63%), Gaps = 18/296 (6%)
Frame = +2
Query: 155 IYILDVXGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSECTFAYIKTNNL 334
+++ + G+VLISR YR DV +D F ++ ++ + +P+ + +F ++K N+
Sbjct: 5 LFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQ-VRSPVTNMARTSFFHVKRGNV 63
Query: 335 YIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFGYPQT 514
+I + T++N N A+VF FL + + M YF +L EE++++NFV+IYELLDE++DFGYPQ
Sbjct: 64 WICAVTRQNVNAAMVFAFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQN 123
Query: 515 TDSKILQEYITQEGHKL---------EMQPKIPMAVTNAVSWRSEGIKYRKNEVFLDVIE 667
TD +L+ +ITQ+G + E Q +I VT + WR EGIKYR+NE+FLDVIE
Sbjct: 124 TDPGVLKTFITQQGVRTADAPVPVTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVIE 183
Query: 668 SVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTGRGKS--------K 823
VNLL N G VL + + G + M+ YLSGMPE + G+NDK+ E + S
Sbjct: 184 YVNLLMNQQGQVLSAHVAGKVAMKSYLSGMPECKFGINDKITIEGKSKPGSDDPNKASRA 243
Query: 824 SVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVK-PLIXIESVXE 988
+V ++D +FHQCV+L++FE + ISFIPPDGE+ELM YR ++ P I V E
Sbjct: 244 AVAIDDCQFHQCVKLTKFETEHAISFIPPDGEYELMRYRTTKDIQLPFRVIPLVRE 299
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 254 bits (621), Expect = 1e-67
Identities = 126/296 (42%), Positives = 187/296 (63%), Gaps = 18/296 (6%)
Frame = +2
Query: 155 IYILDVXGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSECTFAYIKTNNL 334
+++ + G+VLISR YR DV +D F ++ ++ + +P+ + +F ++K N+
Sbjct: 5 LFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQ-VRSPVTNMARTSFFHVKRGNV 63
Query: 335 YIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFGYPQT 514
+I + T++N N A+VF FL + + M YF +L EE++++NFV+IYELLDE++DFGYPQ
Sbjct: 64 WICAVTRQNVNAAMVFEFLKRFADTMQSYFGKLNEENVKNNFVLIYELLDEILDFGYPQN 123
Query: 515 TDSKILQEYITQEGHKL---------EMQPKIPMAVTNAVSWRSEGIKYRKNEVFLDVIE 667
TD +L+ +ITQ+G + E Q +I VT + WR EGIKYR+NE+FLDVIE
Sbjct: 124 TDPGVLKTFITQQGVRTADAPVPVTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVIE 183
Query: 668 SVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTGRGKS--------K 823
VNLL N G VL + + G + M+ YLSGMPE + G+NDK+ E + S
Sbjct: 184 YVNLLMNQQGQVLSAHVAGKVAMKSYLSGMPECKFGINDKITIEGKSKPGSDDPNKASRA 243
Query: 824 SVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVK-PLIXIESVXE 988
+V ++D +FHQCV+L++FE + ISFIPPDGE+ELM YR ++ P I V E
Sbjct: 244 AVAIDDCQFHQCVKLTKFETEHAISFIPPDGEYELMRYRTTKDIQLPFRVIPLVRE 299
>U41023-4|AAA82343.2| 414|Caenorhabditis elegans Adaptin, mu/medium
chain (clathrinassociated complex) protein 3 protein.
Length = 414
Score = 163 bits (395), Expect = 3e-40
Identities = 80/275 (29%), Positives = 150/275 (54%), Gaps = 10/275 (3%)
Frame = +2
Query: 149 SAIYILDVXGKVLISRNYRGDVDLGVIDKFMPLLMEKEEEGMLTPLLQTSECTFAYIKTN 328
++++ ++ G VL+ ++++ + + D F + + + P++ T + N
Sbjct: 3 NSLFFVNSSGDVLLEKHWKSVIHRSICDYFFDIQKKSIHPEDVPPIISTPHHYLINVYQN 62
Query: 329 NLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFGYP 508
NL++V+ +V FL+++++ T+YF E + S+++N V+++ELLDE++D G+P
Sbjct: 63 NLFLVAVITVETPPLMVIEFLHRVIQTFTQYFDEFSDSSMKENCVMVFELLDEMLDNGFP 122
Query: 509 QTTDSKILQEYI----------TQEGHKLEMQPKIPMAVTNAVSWRSEGIKYRKNEVFLD 658
T+ ILQ+ I Q + + +P + + WR +G+KY NE + D
Sbjct: 123 LVTEMNILQDLIKPPNFLRNIANQVTGRTNLSETLPTGQLSNIPWRRQGVKYTNNEAYFD 182
Query: 659 VIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLFESTGRGKSKSVELE 838
VIE ++++ + G+ + +EI G + + LSGMP+L + L + L L+
Sbjct: 183 VIEEIDVIVDKQGSTVFAEIQGYVDVCCKLSGMPDLTMTLINPRL-------------LD 229
Query: 839 DVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRL 943
DV FH CVR R+EN++ +SF+PPDG F L+SY +
Sbjct: 230 DVSFHPCVRYKRWENEKVLSFVPPDGNFRLLSYHI 264
>U21309-2|AAN73882.1| 515|Caenorhabditis elegans Hypothetical
protein C13B9.3 protein.
Length = 515
Score = 58.0 bits (134), Expect = 1e-08
Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Frame = +2
Query: 152 AIYILDVXGKVLISRNYRGDVDL----GVIDKFMPLL-MEKEEEGMLTPLLQTSECTFAY 316
A IL GK+L++R + D+ G++D F L+ EKE ++T + Y
Sbjct: 5 AACILSKTGKLLVARQFVNDMMRSRLEGLVDAFPKLIGNEKEAATRQHTFVETDSVRYVY 64
Query: 317 IKTNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDELID 496
+N+Y+V T KN+NI L V V+ EY + EE+ I + + DE++
Sbjct: 65 HPLDNIYLVLVTTKNSNILEDLETLRLFVRVIPEYCRSNEEKEILAHDFDLIFAFDEVVT 124
Query: 497 FGYPQTTDSKILQEYITQEGHK 562
GY ++ + ++ + + H+
Sbjct: 125 LGYRESVNLAQIRTFTEMDSHE 146
>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical protein
C27H6.1 protein.
Length = 1657
Score = 42.7 bits (96), Expect = 5e-04
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 9/113 (7%)
Frame = +2
Query: 632 YRKNEVFLDVIESVNLLANSNGNVLRSEIVGAIKMRVYLSGMPELRLGLNDKVLF-ESTG 808
Y+++EV + + + + G + + + +L+G P L +GLND+ +
Sbjct: 1249 YKQDEVQIHCYDEYSAFVDKEGILSDQKARVRLFCLAFLTGSPVLEVGLNDRRRQGKEIV 1308
Query: 809 RGKS-------KSVELEDVKFHQCVRLSRFENDRTISFIPPDG-EFELMSYRL 943
R K + + E ++FH V F+ ++ I+F PPDG FE+M +R+
Sbjct: 1309 RRKDILPMYTERWIRFEALEFHSIVNKPEFDKEQVIAFSPPDGCFFEIMRFRV 1361
>AF016440-4|AAB65902.1| 157|Caenorhabditis elegans Adaptin, small
chain (clathrinassociated complex) protein 1 protein.
Length = 157
Score = 39.1 bits (87), Expect = 0.007
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 1/99 (1%)
Frame = +2
Query: 287 LQTSECTFAYIKTNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVV 466
L+ + Y + +LY ++N N + +++ VE++ +YF + E I NF
Sbjct: 50 LEYKDLKVVYKRYASLYFCCAIEQNDNELITLEVIHRYVELLDKYFGSVCELDIIFNFEK 109
Query: 467 IYELLDELIDFGYPQTTDSK-ILQEYITQEGHKLEMQPK 580
Y +LDE + G Q T K +L+ Q+ + E P+
Sbjct: 110 AYFILDEFLLAGEIQETSKKQVLKAIAAQDLIQEEETPQ 148
>U53340-2|AAA96207.1| 142|Caenorhabditis elegans Ap-2 small chain
(clathrin associatedcomplex) protein 2 protein.
Length = 142
Score = 34.3 bits (75), Expect = 0.19
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +2
Query: 389 LYKIVEVMTEYFKELEEESIRDNFVVIYELLDELIDFG-YPQTTDSKILQEYI 544
++ VEV+ EYF + E + NF +Y ++DE+ G +T+ +K+L++ +
Sbjct: 84 IHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLL 136
>Z80220-2|CAD27608.1| 3185|Caenorhabditis elegans Hypothetical protein
T08G11.1b protein.
Length = 3185
Score = 33.5 bits (73), Expect = 0.33
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +2
Query: 494 DFGYPQTTDSKILQEYITQEGHKLEM--QPKIPMAVTNAVSWRSEGIKYRKNEVFLDVIE 667
D +P++T + IL +T H E K+ +AV N + S R+NEV V+
Sbjct: 1577 DSMHPESTQALILSFNVTAASHPNEQTKDTKMNVAVENLTIFSSYYQSSRRNEVTYQVLT 1636
Query: 668 SVNLLANSNGNVLRSEIVGAIKM 736
V + A N N R +KM
Sbjct: 1637 PVRIEALVNMNTERKTTDAVLKM 1659
>Z80220-1|CAB02304.1| 3212|Caenorhabditis elegans Hypothetical protein
T08G11.1a protein.
Length = 3212
Score = 33.5 bits (73), Expect = 0.33
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +2
Query: 494 DFGYPQTTDSKILQEYITQEGHKLEM--QPKIPMAVTNAVSWRSEGIKYRKNEVFLDVIE 667
D +P++T + IL +T H E K+ +AV N + S R+NEV V+
Sbjct: 1577 DSMHPESTQALILSFNVTAASHPNEQTKDTKMNVAVENLTIFSSYYQSSRRNEVTYQVLT 1636
Query: 668 SVNLLANSNGNVLRSEIVGAIKM 736
V + A N N R +KM
Sbjct: 1637 PVRIEALVNMNTERKTTDAVLKM 1659
>Z36949-2|CAA85416.1| 184|Caenorhabditis elegans Hypothetical
protein F59E10.3 protein.
Length = 184
Score = 32.7 bits (71), Expect = 0.58
Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 6/134 (4%)
Frame = +2
Query: 143 SSSAIYILDVXGKVLISRNYRGDVDLGVIDK---FMPLLMEKEEEGMLTPLLQTSECTFA 313
S I ILD G ++++ Y G + + F L K +L T
Sbjct: 13 SIKGIVILDQDGNRVLAKYY-DRTTFGTVKEQKAFEKSLFSKTSRNTSADILLLDGVTCL 71
Query: 314 YIKTNNLY--IVSTTKKNAN-IALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLD 484
Y +LY ++ +T++N + LY V V+ K +E++++ D+ I ++D
Sbjct: 72 YRSNVDLYFYVLGSTRENELFLDATLTCLYDAVSVVLR--KNVEKKALIDSMDTIMLIID 129
Query: 485 ELIDFGYPQTTDSK 526
E+ D G TD++
Sbjct: 130 EICDEGIIMETDAQ 143
>U28971-7|ABC48263.1| 309|Caenorhabditis elegans Hypothetical
protein B0244.4 protein.
Length = 309
Score = 32.7 bits (71), Expect = 0.58
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Frame = -1
Query: 756 IPDKYTLILIAPTISLLSTLPFELANKFTDSITSKKTSFFLYFMPSDLHDTALV---TAM 586
I K + +++ IS L+ LA + ITS T +FL+F+ DL +L+
Sbjct: 77 ITKKQYIFMVSRAISALTACVIMLALRILQLITSSFTIYFLFFLIDDLSFYSLLGSYVGS 136
Query: 585 GILGCISSL*PSWVMYSCRILLSVV 511
IL ++++ P ++YS RI + V
Sbjct: 137 AILLYLATIRP--ILYSNRISVRTV 159
>AF077533-2|AAP40529.1| 972|Caenorhabditis elegans Hypothetical
protein F54G2.1b protein.
Length = 972
Score = 30.7 bits (66), Expect = 2.3
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +2
Query: 224 VIDKFMPLLMEKEEEGMLT 280
+IDK+ PL ++KEEE MLT
Sbjct: 429 IIDKWQPLTLDKEEEDMLT 447
>AF077533-1|AAZ91357.1| 1126|Caenorhabditis elegans Hypothetical
protein F54G2.1a protein.
Length = 1126
Score = 30.7 bits (66), Expect = 2.3
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +2
Query: 224 VIDKFMPLLMEKEEEGMLT 280
+IDK+ PL ++KEEE MLT
Sbjct: 413 IIDKWQPLTLDKEEEDMLT 431
>AC025723-10|AAK29940.1| 691|Caenorhabditis elegans Mammalian fe65
homolog protein1, isoform a protein.
Length = 691
Score = 30.7 bits (66), Expect = 2.3
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 320 KTNNLYIVSTTKKNANIALVFVFLYKIVEVMTEYFKELEEESIRDNFVVIYELLDE 487
K NLY +KN +I +++V K E+ E+F + +E D + E +E
Sbjct: 44 KKKNLYSDLACRKNVDIFIIYVSFEKKKEIFLEFFHHVLQEE-HDEYSAFKEAYEE 98
>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical protein
T06E4.3b protein.
Length = 2514
Score = 29.9 bits (64), Expect = 4.1
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Frame = +2
Query: 236 FMPLLMEKEEEGMLTP-----LLQTSECTFAYIKTNNLYIVSTTKKNANIALVFVFLYKI 400
FM LL+ E L P +++ T+ IK +++ST + N + F+F+++
Sbjct: 981 FMHLLLVSARE-FLNPRNPSMIVEQLRATYENIKKGEKFMISTAIETRNEGIEFLFIFRT 1039
Query: 401 VEVMTEYFKELEEESIRDNFVVIYE 475
+YF L E+ ++F ++ +
Sbjct: 1040 YFTNDQYF--LTREATAESFRILLQ 1062
>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical protein
T06E4.3a protein.
Length = 2531
Score = 29.9 bits (64), Expect = 4.1
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Frame = +2
Query: 236 FMPLLMEKEEEGMLTP-----LLQTSECTFAYIKTNNLYIVSTTKKNANIALVFVFLYKI 400
FM LL+ E L P +++ T+ IK +++ST + N + F+F+++
Sbjct: 981 FMHLLLVSARE-FLNPRNPSMIVEQLRATYENIKKGEKFMISTAIETRNEGIEFLFIFRT 1039
Query: 401 VEVMTEYFKELEEESIRDNFVVIYE 475
+YF L E+ ++F ++ +
Sbjct: 1040 YFTNDQYF--LTREATAESFRILLQ 1062
>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
protein.
Length = 2514
Score = 29.9 bits (64), Expect = 4.1
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Frame = +2
Query: 236 FMPLLMEKEEEGMLTP-----LLQTSECTFAYIKTNNLYIVSTTKKNANIALVFVFLYKI 400
FM LL+ E L P +++ T+ IK +++ST + N + F+F+++
Sbjct: 981 FMHLLLVSARE-FLNPRNPSMIVEQLRATYENIKKGEKFMISTAIETRNEGIEFLFIFRT 1039
Query: 401 VEVMTEYFKELEEESIRDNFVVIYE 475
+YF L E+ ++F ++ +
Sbjct: 1040 YFTNDQYF--LTREATAESFRILLQ 1062
>U53154-6|AAC25855.3| 357|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 107 protein.
Length = 357
Score = 28.7 bits (61), Expect = 9.5
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 430 FFEVLSHNFNNFVQEYKHKCNISIFLCG*YNVQV 329
FFE L + N +++ + KC I LCG YN +V
Sbjct: 313 FFETL--DTLNIIEKAERKCQEEIALCGFYNFEV 344
>AY204192-1|AAO39196.1| 357|Caenorhabditis elegans nuclear receptor
NHR-107 protein.
Length = 357
Score = 28.7 bits (61), Expect = 9.5
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 430 FFEVLSHNFNNFVQEYKHKCNISIFLCG*YNVQV 329
FFE L + N +++ + KC I LCG YN +V
Sbjct: 313 FFETL--DTLNIIEKAERKCQEEIALCGFYNFEV 344
>AY204191-1|AAO39195.1| 357|Caenorhabditis elegans nuclear receptor
NHR-107 protein.
Length = 357
Score = 28.7 bits (61), Expect = 9.5
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 430 FFEVLSHNFNNFVQEYKHKCNISIFLCG*YNVQV 329
FFE L + N +++ + KC I LCG YN +V
Sbjct: 313 FFETL--DTLNIIEKAERKCQEEIALCGFYNFEV 344
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,386,385
Number of Sequences: 27780
Number of extensions: 501324
Number of successful extensions: 1218
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1207
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3620756926
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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