Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_B04
         (1293 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    28   3.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   9.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 26/103 (25%), Positives = 30/103 (29%), Gaps = 8/103 (7%)
 Frame = -1

Query: 732 PPXPPPXXXFXPFXPXGXXFFFXXXPPFXGXPFPPPXXGXXXXPP--PXXXXXFFXFXAX 559
           PP PP      P  P          PP    P PPP  G    PP  P            
Sbjct: 230 PPIPPSIPSSRP--PERVPSLSAPAPP----PIPPPSNGTVSSPPNSPPRPIAPVSMNPA 283

Query: 558 VXXPKIXPXXPPGXGFFFXG------KXXPPPPPXGKKKXXPP 448
           +      P  PP              +  PPPPP  + +  PP
Sbjct: 284 INSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPP 326


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -1

Query: 549 PKIXPXXPPGXGFFFXGKXXPPPPPXGKKK 460
           P   P  PP  GF    +  PPPPP   KK
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPGYVKK 35


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/46 (32%), Positives = 15/46 (32%)
 Frame = -1

Query: 732  PPXPPPXXXFXPFXPXGXXFFFXXXPPFXGXPFPPPXXGXXXXPPP 595
            PP P P     P  P          PP    P P P  G    PPP
Sbjct: 1169 PPVPAPSSGIPPV-PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/45 (31%), Positives = 14/45 (31%)
 Frame = -1

Query: 729 PXPPPXXXFXPFXPXGXXFFFXXXPPFXGXPFPPPXXGXXXXPPP 595
           P PPP     P             P   G P PPP  G     PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.148    0.478 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,207,117
Number of Sequences: 5004
Number of extensions: 27375
Number of successful extensions: 35
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 705448190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)