Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_B03
         (1247 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    26   0.68 
DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory pro...    24   2.7  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    23   3.6  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    23   6.3  

>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 25.8 bits (54), Expect = 0.68
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +1

Query: 544 SKIFKYRRGNCLEGCWFKCWDFCYSLYSPQNFRSIPDSHNF 666
           SK+       C E C  K  +FC   +S   F  I  S+ F
Sbjct: 231 SKVKSILNKKCCEKCGLKKIEFCRPTFSAARFYGIDFSNTF 271


>DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory
           protein 13 protein.
          Length = 124

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = +1

Query: 640 RSIPDSHNFDC---NTFHRSTLKKYWNFKTWYKCWWWE 744
           + IPD+   +C   N  H+  ++K  ++    K  WWE
Sbjct: 60  KDIPDALKNECAKCNDKHKEGIRKVIHYLVKQKPEWWE 97


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 404 GGFTFVLMFRTPTTMFYL*FFLCIHF 327
           G FT  L+F  P  +F + F LC ++
Sbjct: 77  GYFTVHLLFYCPFIIFTVHFLLCTYY 102


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 22.6 bits (46), Expect = 6.3
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +1

Query: 634 NFRSIPDSHNFDCNTFHRSTLKKYWNFKTWYKCWW 738
           N   I   +NF+ NT H    K Y  F    K  W
Sbjct: 416 NIFLITPFYNFNENTIHSKLCKLYATFLIALKLVW 450


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,192
Number of Sequences: 336
Number of extensions: 5369
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 36582916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)