Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_B03
         (1247 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    29   1.8  
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    28   2.4  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    28   3.1  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    27   5.4  
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p...    26   9.5  

>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 9/25 (36%), Positives = 10/25 (40%)
 Frame = +1

Query: 670 CNTFHRSTLKKYWNFKTWYKCWWWE 744
           C  F      KY N + W   W WE
Sbjct: 292 CKNFSNDLSDKYQNIRLWVSVWQWE 316


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 21/80 (26%), Positives = 37/80 (46%)
 Frame = -3

Query: 840 SLKGDPRPRXXXXXXXXXXXXXXXKLFMNIIYFPPPAFIPRFKIPIFLKCRTMKGVAVKV 661
           S+KGD  P                K+   + Y   P+ I R  IP+ L+ + + G+A + 
Sbjct: 238 SIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNY-KEPSSIQRAAIPVLLQRKDLIGIA-ET 295

Query: 660 MAIRNGAKILWTV*AITKVP 601
            + +  A I+  + AI+K+P
Sbjct: 296 GSGKTAAFIIPLIIAISKLP 315


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 12/40 (30%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = -3

Query: 240 VWFPVKGLGTL-LCMDEDRLTXPRQSYLLTYGSTCIVISI 124
           ++F +  +GTL + ++  +LT  + S L+ YG+ C++I +
Sbjct: 228 IFFGMPAIGTLKISLERLQLTFMQVSQLVGYGTKCLIILV 267


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 449 GSTVIVFHVTISLISLGSCYLLVSSG 526
           G+  + F V+IS+ SLGSC  LV  G
Sbjct: 124 GNVSMDFGVSISVSSLGSCVFLVGFG 149


>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 303

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 659 ITLTATPFIVRHLRNIGILKRGINAGG 739
           I +T  P    HL  IG+ ++G++A G
Sbjct: 246 IVITEYPLRETHLEEIGVFEKGMDAAG 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,967,105
Number of Sequences: 5004
Number of extensions: 82256
Number of successful extensions: 175
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 679334062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)