Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_B02
         (1269 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po...   125   1e-29
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    56   8e-09
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    32   0.15 
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    28   3.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.2  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    26   9.6  

>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score =  125 bits (302), Expect = 1e-29
 Identities = 62/136 (45%), Positives = 81/136 (59%)
 Frame = +3

Query: 342 SQTVLLQNLYVNPQNXAKSADGSHLVVANVSDEXMQEHYDNFCEDVXVECEDKYGEIXEM 521
           SQT+L  N+Y NP +               +   + E +D F ED+  E   KYGE+ ++
Sbjct: 43  SQTILCPNMYKNPIHEPNGK--------KFTQRELAEQFDAFYEDMFCEFS-KYGEVEQL 93

Query: 522 NVXDNLGDHXXGNVXIKFRREEDAXXAVNDLNNRWFGGRPVYAELSPVTDSREXCCRQYE 701
            V DN+GDH  GNV ++F+ EE A  A++DLN+RW+  RPVYAELSPVTD RE CCRQ+E
Sbjct: 94  VVCDNVGDHLVGNVYVRFKYEESAQNAIDDLNSRWYSQRPVYAELSPVTDFREACCRQHE 153

Query: 702 MGECTXSGCGYFMXLK 749
             EC   G   FM  K
Sbjct: 154 TSECQRGGLCNFMHAK 169



 Score = 64.9 bits (151), Expect = 2e-11
 Identities = 27/41 (65%), Positives = 32/41 (78%)
 Frame = +2

Query: 218 AEYLAAIXGTEKDXVXCSXYFXIGACRHGDRCSRIHNKPTF 340
           A +LA+I GTE+D V CS Y+ IGACRHG+RCSR H KP F
Sbjct: 2   ASHLASIYGTEQDKVNCSFYYKIGACRHGERCSRKHVKPNF 42


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 56.4 bits (130), Expect = 8e-09
 Identities = 27/82 (32%), Positives = 42/82 (51%)
 Frame = +3

Query: 426 NVSDEXMQEHYDNFCEDVXVECEDKYGEIXEMNVXDNLGDHXXGNVXIKFRREEDAXXAV 605
           N ++E          +DV  EC++KYG++  + V  N      G + +KF   + A  A+
Sbjct: 516 NPAEETSPNWVQELEQDVKEECDEKYGKVVHIAVVPN----ELGQIFVKFENADFAEKAI 571

Query: 606 NDLNNRWFGGRPVYAELSPVTD 671
             L+ RWFGGR + A + P TD
Sbjct: 572 TGLHQRWFGGRTIKASILPETD 593


>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 32.3 bits (70), Expect = 0.15
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +3

Query: 498 KYGEIXEMNVXDNLGDHXXGNVXIKFRREEDAXXAVNDLNNRWFGGRPVYAELSPVTDSR 677
           ++GEI  +++  +  D   G   + +   E A  AV++LN++ + G+ +Y   +     R
Sbjct: 283 QFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHER 342

Query: 678 EXCCR-QYE 701
           E   R +YE
Sbjct: 343 EEELRKRYE 351


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 567 IKFRREEDAXXAVNDLNNRWFGGRPV 644
           ++F  E DA  ++  LN   +GGRP+
Sbjct: 325 VQFENENDAASSIEKLNGYRYGGRPL 350


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +2

Query: 776  PXFPXXERSSCPVPXPXETXPXPXPRATP 862
            P  P     + P+P P    P P P +TP
Sbjct: 1022 PPVPLPSADAPPIPVPSTAPPVPIPTSTP 1050


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 535 LSXTFISXISPYLSSHSTNTSSQKLS*CSCIXSSDTLATT 416
           L  TF+  I  YL +HS    + + S    I SS++L+T+
Sbjct: 463 LFNTFVDQIPSYLKNHSILDETTRKSFYRIILSSNSLSTS 502


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,505
Number of Sequences: 5004
Number of extensions: 43821
Number of successful extensions: 107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 689550766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)