Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_B02
         (1269 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-23|CAB55137.1|  285|Caenorhabditis elegans Hypothetical...   147   1e-35
AL110485-8|CAB60356.1|  434|Caenorhabditis elegans Hypothetical ...    37   0.026
Z50110-2|CAA90446.1|  566|Caenorhabditis elegans Hypothetical pr...    34   0.25 
Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical pr...    34   0.25 
Z73427-7|CAA97799.1|  371|Caenorhabditis elegans Hypothetical pr...    33   0.43 
AC024826-10|AAM97977.1|  435|Caenorhabditis elegans Hypothetical...    30   3.0  
AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical ...    30   3.0  
AC024791-21|AAF60666.1|  749|Caenorhabditis elegans Rnp (rrm rna...    30   3.0  
Z74033-2|CAA98476.2|  419|Caenorhabditis elegans Hypothetical pr...    29   9.3  
Z74033-1|CAA98475.2|  460|Caenorhabditis elegans Hypothetical pr...    29   9.3  

>AL117204-23|CAB55137.1|  285|Caenorhabditis elegans Hypothetical
           protein Y116A8C.35 protein.
          Length = 285

 Score =  147 bits (357), Expect = 1e-35
 Identities = 72/139 (51%), Positives = 91/139 (65%)
 Frame = +3

Query: 342 SQTVLLQNLYVNPQNXAKSADGSHLVVANVSDEXMQEHYDNFCEDVXVECEDKYGEIXEM 521
           S TV+L+N Y NP    + AD    V      E  Q ++D+F E+V VE E KYGE+ E+
Sbjct: 51  SPTVVLKNFYHNPVVDVRQADAFDKVGKRNDQE--QRYFDDFYEEVFVEMERKYGEVEEI 108

Query: 522 NVXDNLGDHXXGNVXIKFRREEDAXXAVNDLNNRWFGGRPVYAELSPVTDSREXCCRQYE 701
           NV +N+G+H  GNV +KF +EEDA  A NDLNNRWF G+P+YAEL PVTD RE  CRQ+E
Sbjct: 109 NVCENIGEHMVGNVYVKFMKEEDAEKAKNDLNNRWFNGQPIYAELCPVTDFRESRCRQHE 168

Query: 702 MGECTXSGCGYFMXLKPIS 758
           +  C+  G   FM LK IS
Sbjct: 169 VTTCSKGGFCNFMHLKAIS 187



 Score = 71.3 bits (167), Expect = 1e-12
 Identities = 29/44 (65%), Positives = 35/44 (79%)
 Frame = +2

Query: 209 ITXAEYLAAIXGTEKDXVXCSXYFXIGACRHGDRCSRIHNKPTF 340
           ++ AEYLA+I GTEKD V CS +F  GACRHGD+CSR H+ PTF
Sbjct: 7   LSGAEYLASIYGTEKDKVNCSFFFKTGACRHGDKCSRAHHTPTF 50


>AL110485-8|CAB60356.1|  434|Caenorhabditis elegans Hypothetical
           protein Y46G5A.13 protein.
          Length = 434

 Score = 37.1 bits (82), Expect = 0.026
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 498 KYGEIXEMNVX-DNLGDHXXGNVXIKFRREEDAXXAVNDLNNRWFGGRPV 644
           K+GE+ E  +  DN  +   G   + + R EDA  A++++N  W G R +
Sbjct: 154 KFGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTI 203


>Z50110-2|CAA90446.1|  566|Caenorhabditis elegans Hypothetical
           protein F18H3.3b protein.
          Length = 566

 Score = 33.9 bits (74), Expect = 0.25
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 501 YGEIXEMNVXDNLGDHXXGNVXIKFRREEDAXXAVNDLNNRWFGGRPVYAELSP-VTDSR 677
           +G I    V  +      G   + F + E+A  AV D+N++  G +P+Y  L+    D R
Sbjct: 366 FGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRR 425

Query: 678 EXCCRQY 698
                QY
Sbjct: 426 AQLASQY 432


>Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical
           protein F18H3.3a protein.
          Length = 692

 Score = 33.9 bits (74), Expect = 0.25
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 501 YGEIXEMNVXDNLGDHXXGNVXIKFRREEDAXXAVNDLNNRWFGGRPVYAELSP-VTDSR 677
           +G I    V  +      G   + F + E+A  AV D+N++  G +P+Y  L+    D R
Sbjct: 366 FGTITSAKVMVDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRR 425

Query: 678 EXCCRQY 698
                QY
Sbjct: 426 AQLASQY 432


>Z73427-7|CAA97799.1|  371|Caenorhabditis elegans Hypothetical
           protein F58B3.7 protein.
          Length = 371

 Score = 33.1 bits (72), Expect = 0.43
 Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
 Frame = +3

Query: 420 VANVSDEXMQEHYDNFCEDVXVECEDKYGEIXEM--NVXDNLGDHXXGNVXIKFRREEDA 593
           + ++S+   +E    F +++  E E K G++  +  +V ++  +     V ++F     A
Sbjct: 281 LTDLSEVSGEEGKKEFADEIKEEME-KCGQVVNVIVHVDESQEEDRQVRVFVEFTNNAQA 339

Query: 594 XXAVNDLNNRWFGGRPVYAELSPVTD 671
             A   +N R+FGGR V A    V+D
Sbjct: 340 IKAFVMMNGRFFGGRSVSAGFQNVSD 365


>AC024826-10|AAM97977.1|  435|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.3c protein.
          Length = 435

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 555 GNVXIKFRREEDAXXAVNDLNNRWFGGRPVYAELSPV 665
           GNV +K      A  AV+ L+ RWF G+ + A   PV
Sbjct: 325 GNVYVKCPSIVIAHQAVSALHGRWFSGKVITANYVPV 361


>AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.3a protein.
          Length = 580

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +3

Query: 555 GNVXIKFRREEDAXXAVNDLNNRWFGGRPVYAELSPV 665
           GNV +K      A  AV+ L+ RWF G+ + A   PV
Sbjct: 470 GNVYVKCPSIVIAHQAVSALHGRWFSGKVITANYVPV 506


>AC024791-21|AAF60666.1|  749|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 6, isoform b protein.
          Length = 749

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +3

Query: 459 DNFCE-DVXVECEDKYGEIXEMNVXDNLGDHXXGNVXIKFRREEDAXXAVNDLNNRWFGG 635
           D F E ++  EC  KYG + ++ V  N        + +K+        A   L+ R+FGG
Sbjct: 672 DEFLEGEIREEC-GKYGNVIDV-VIANFASSGLVKIFVKYSDSMQVDRAKAALDGRFFGG 729

Query: 636 RPVYAE 653
             V AE
Sbjct: 730 NTVKAE 735


>Z74033-2|CAA98476.2|  419|Caenorhabditis elegans Hypothetical
           protein F38B7.1b protein.
          Length = 419

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 266 CSXYFXIGACRHGDRCSRIHNKP 334
           C  +   G C +G RC  IHN+P
Sbjct: 201 CQSFHQSGYCPYGPRCHFIHNEP 223


>Z74033-1|CAA98475.2|  460|Caenorhabditis elegans Hypothetical
           protein F38B7.1a protein.
          Length = 460

 Score = 28.7 bits (61), Expect = 9.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 266 CSXYFXIGACRHGDRCSRIHNKP 334
           C  +   G C +G RC  IHN+P
Sbjct: 242 CQSFHQSGYCPYGPRCHFIHNEP 264


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,952,037
Number of Sequences: 27780
Number of extensions: 261846
Number of successful extensions: 647
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3537281262
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)