Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_B01
         (1218 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    27   4.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   9.2  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    26   9.2  
SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase Gmh1|Schizosa...    26   9.2  

>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = -3

Query: 664 VTKKYSVPP-LRPNVPGPIESANTLTSANAPLIVPNPRPDT*AISSLLLPISWFSDISLR 488
           VT + ++PP   P  P P  +ANT  +  A  I P P       ++ + P+S  + +   
Sbjct: 204 VTPQSTLPPGFSPATPAPTSAANTPATIAATSIPPVPNVPLVGATTAVPPLSIPNVLPFT 263

Query: 487 PASVFLSKRYIPYRN 443
            A  F     +P  N
Sbjct: 264 AAQHFPGMPAMPMMN 278


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 293 GHSHREHHDRSPKRQQGTTKELRE 222
           GHSH + HDR  ++++   +E R+
Sbjct: 725 GHSHSKSHDREKEKEKKKDREHRK 748


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -3

Query: 712 LQNVLSSIIQRVIAELVTKKYSVPPLRPN-VPGPIESANTLTSANAPLIVPNP 557
           L  VL S +   +A L+ K  SVP   P+ VP  I S N       P + PNP
Sbjct: 333 LPKVLPSSMLSSVAPLMQKSKSVPTSIPSVVPANISSPNP-----NPTLAPNP 380


>SPAC5H10.11 |gmh1||alpha-1,2-galactosyltransferase
           Gmh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -3

Query: 388 GTTAYHTNEDNKKDSNHPNAAAIIMMMRT-GSVATVIANI 272
           G+T  +T   N +D N P +  I+M++ + G+V +  +N+
Sbjct: 65  GSTTLYTATVNHEDLNEPKSHEIVMLLASDGNVGSFESNL 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,917,481
Number of Sequences: 5004
Number of extensions: 76682
Number of successful extensions: 218
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 659412242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)