Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_B01
(1218 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0408 + 9901892-9902004,9903777-9903862,9905019-9905129,990... 48 1e-05
05_03_0059 + 7900544-7900673,7900774-7901027,7901949-7902320 31 2.4
02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875 28 3.0
05_07_0139 - 27968816-27968890,27969065-27969456,27969558-279696... 30 4.2
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 29 9.8
07_01_0674 + 5047503-5047646,5047808-5047901,5048743-5048828,504... 29 9.8
06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011... 29 9.8
>02_02_0408 +
9901892-9902004,9903777-9903862,9905019-9905129,
9905182-9905307,9905546-9905673,9906634-9906726,
9907873-9908059,9908877-9909637
Length = 534
Score = 48.4 bits (110), Expect = 1e-05
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Frame = +3
Query: 552 GLGFGTMSGAFALVNVLADSIGPGTLGLSGGTEY-FFVTSSAMTLCMILLNTFWSIIFFS 728
GLG G F +++L + G T + + FF+ S+ ++L ++++TF II F+
Sbjct: 106 GLGHGVAHAVFFCLSLLTPAFGRATFYVEKCSRMPFFLVSAIISLGFLVIHTFSMIIAFN 165
Query: 729 GFDEKNYLKILWVIISHFFVSFLSLLN 809
G+DE+ ++V + H S ++L+N
Sbjct: 166 GYDERKRSDQVFVPVVHLIASVMTLIN 192
>05_03_0059 + 7900544-7900673,7900774-7901027,7901949-7902320
Length = 251
Score = 30.7 bits (66), Expect = 2.4
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = -3
Query: 730 PLKNMILQNVLS-SIIQRVIAELVTKKYSVPPLRPNVPGPIESANTLTSANAPLIVPNP 557
P++ ++++ +L+ S++ V A ++ + SVP P + G I ANT+ N NP
Sbjct: 141 PMQGLVMEIILTFSLLFVVYATILDPRSSVPGFGPLLTGLIVGANTIAGGNFSGASMNP 199
>02_01_0387 - 2804990-2805059,2805106-2806086,2806856-2806875
Length = 356
Score = 28.3 bits (60), Expect(2) = 3.0
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = +2
Query: 626 IRPEWWDRILFCDKFCNDS 682
+R WW +FC FC S
Sbjct: 246 VRGNWWTSCIFCKSFCRSS 264
Score = 20.6 bits (41), Expect(2) = 3.0
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +2
Query: 530 ARDGLCVWPRIRNNEWSIC 586
A D V+ R+R N W+ C
Sbjct: 236 AGDDYEVYHRVRGNWWTSC 254
>05_07_0139 -
27968816-27968890,27969065-27969456,27969558-27969640,
27969841-27969933,27970012-27970223,27970604-27970753,
27971195-27971254,27971369-27971496,27972008-27972416,
27973514-27973570
Length = 552
Score = 29.9 bits (64), Expect = 4.2
Identities = 28/104 (26%), Positives = 41/104 (39%), Gaps = 4/104 (3%)
Frame = -3
Query: 646 VPPLRPN-VPGPI---ESANTLTSANAPLIVPNPRPDT*AISSLLLPISWFSDISLRPAS 479
+P RP GP+ E+ +A +V NP A + + SD S R
Sbjct: 395 IPTARPGRTVGPVLPFENPGAADPHSARRVVRNPMVPPAAANKSGYSYNLKSDYSDRQHQ 454
Query: 478 VFLSKRYIPYRNNS*NIIAKIIPKTKYDLRGTTAYHTNEDNKKD 347
L K + YR + AK+ P T D+R + Y T + D
Sbjct: 455 EELEKDRVQYRPAQHLMDAKVAPDTAPDIRSSQYYFTRSAPRTD 498
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 28.7 bits (61), Expect = 9.8
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +3
Query: 591 VNVLADSIGPGTLGLSGGTEYFFVTSSAMTLCMILLNTFWSIIFFSGFDEKNYLKILW 764
+N LA+ G TL + +E F S AM ++++ +++ + NY + LW
Sbjct: 156 LNKLAERAGDNTLRIDNRSEPKFKASPAMAPRLVIILFLLAVVASAAVARSNYEEPLW 213
>07_01_0674 +
5047503-5047646,5047808-5047901,5048743-5048828,
5049380-5049429,5049517-5049586,5049668-5049749,
5049867-5050267,5050414-5050941,5051823-5052044
Length = 558
Score = 28.7 bits (61), Expect = 9.8
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 649 SVPPLRPNVPGPIESANTLTSANAPLIVPNPRP 551
S+PPL P P P + AN + PL P P P
Sbjct: 225 SLPPLPPPPPPPPKPANIAGAPGLPLPPPPPPP 257
>06_03_1490 +
30497980-30498102,30499034-30500156,30500914-30501132,
30501228-30501454,30501810-30501884,30502250-30502321,
30502765-30502863,30502975-30503046,30503131-30503245,
30503455-30503523,30503625-30503952,30504320-30504437,
30504522-30505448
Length = 1188
Score = 28.7 bits (61), Expect = 9.8
Identities = 35/137 (25%), Positives = 52/137 (37%), Gaps = 4/137 (2%)
Frame = -3
Query: 646 VPPLRPNVPGPIESANTLTSANAPLIVPNPRPDT*AISSLLLPISW-FSDISLRPASVFL 470
+P R NV P+ +A ++TS P P P + AI P+S + L+P +V +
Sbjct: 92 IPAPRINVSTPLPNATSVTSPLQPTQAPRPAQQSLAIQGSQGPLSTSLNPQVLQPGNV-V 150
Query: 469 SKRYIPYRNNS*NIIAKIIPK---TKYDLRGTTAYHTNEDNKKDSNHPNAAAIIMMMRTG 299
N IA P + + TT T+ N K S P + T
Sbjct: 151 RPPQASIANTPAQAIAPRAPAGGVPNHTVPATTGLSTDWFNGKKSASP--LGVTSQTPTR 208
Query: 298 SVATVIANITIGAPNAS 248
V+ + T G P S
Sbjct: 209 GVSPQVNLATAGIPTQS 225
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,433,550
Number of Sequences: 37544
Number of extensions: 470145
Number of successful extensions: 1231
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3736328292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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