Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_B01
(1218 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021466-1|CAA16282.1| 308|Caenorhabditis elegans Hypothetical ... 92 8e-19
AL132863-5|CAB60571.1| 275|Caenorhabditis elegans Hypothetical ... 33 0.54
AC024751-10|AAY55884.1| 654|Caenorhabditis elegans Hypothetical... 29 5.0
Z81031-4|CAF31468.2| 421|Caenorhabditis elegans Hypothetical pr... 29 8.8
Z81031-3|CAF31467.1| 455|Caenorhabditis elegans Hypothetical pr... 29 8.8
Z81031-2|CAF31464.1| 429|Caenorhabditis elegans Hypothetical pr... 29 8.8
Z81031-1|CAB02718.4| 432|Caenorhabditis elegans Hypothetical pr... 29 8.8
AF539814-1|AAN16459.1| 421|Caenorhabditis elegans tyramine rece... 29 8.8
AF539813-1|AAN16458.1| 444|Caenorhabditis elegans tyramine rece... 29 8.8
AF068713-2|AAC17805.1| 347|Caenorhabditis elegans Seven tm rece... 29 8.8
AF016444-2|AAN73877.1| 320|Caenorhabditis elegans Serpentine re... 29 8.8
AC024796-7|AAN60505.2| 414|Caenorhabditis elegans Hypothetical ... 29 8.8
>AL021466-1|CAA16282.1| 308|Caenorhabditis elegans Hypothetical
protein VF36H2L.1 protein.
Length = 308
Score = 91.9 bits (218), Expect = 8e-19
Identities = 70/252 (27%), Positives = 112/252 (44%), Gaps = 26/252 (10%)
Frame = +3
Query: 237 SCSLLAFGAPIVMFAMTVATDPVRIIIMIAAAFGWXXXXXXXXXVWYAV-VPLRSYLVFG 413
+C + +F I +F +A DPVRII+ +F W W + L +
Sbjct: 8 ACYIASFSPSIALFCSFIAHDPVRIILFFLGSFFWLVSLLFSSLAWLGLSTVLPDTFLLS 67
Query: 414 MIFAIIFQELFRYGMYLLLRKTEAGLKEISENHEI----GSNKLE-----MAYVSGLGFG 566
+ II QEL R ++LL+K + GL +I+ +I G + L +A V GLG G
Sbjct: 68 LTVCIIAQELSRVAYFMLLKKAQRGLNKITRQGQISVAPGVSDLHNARHMLALVCGLGMG 127
Query: 567 TMSGAFALVNVLADSIGPGTLGLSGGTEYFFVTSS--------AMTLCMILLNTF---WS 713
+S F +N A GPGT+GL + + ++ TL ILL F W+
Sbjct: 128 VISALFYTMNAFAIFSGPGTIGLPNALKTGEIDTNRAGKYLPLCYTLSAILLTLFHVTWT 187
Query: 714 IIFFSGFDEKNYLKILWV-----IISHFFVSFLSLLNSRELYAASILPSYXVLMITSYIA 878
I+ + + + +V ++SH V+FLS LNSR + + +L+I
Sbjct: 188 IMVWDSCHKIGRIPSAFVPGAAAVVSHLLVTFLSSLNSRGFHVLVFAVQFLILLICIAYC 247
Query: 879 FRCAGGSXKTFI 914
GG+ +F+
Sbjct: 248 NVIMGGTISSFV 259
>AL132863-5|CAB60571.1| 275|Caenorhabditis elegans Hypothetical
protein Y37H2A.9 protein.
Length = 275
Score = 32.7 bits (71), Expect = 0.54
Identities = 25/80 (31%), Positives = 41/80 (51%)
Frame = +3
Query: 624 TLGLSGGTEYFFVTSSAMTLCMILLNTFWSIIFFSGFDEKNYLKILWVIISHFFVSFLSL 803
T+ L G T+ F+ S +C ++ F+SIIFF F E NY + H + +L
Sbjct: 6 TVNLKGHTD-IFLHGSRRDVCSTVVFYFFSIIFFVFFSEFNY------VYQHGIEA--NL 56
Query: 804 LNSRELYAASILPSYXVLMI 863
L+S E++ ++ Y L+I
Sbjct: 57 LSSHEVHYQALGGEYKTLVI 76
>AC024751-10|AAY55884.1| 654|Caenorhabditis elegans Hypothetical
protein Y18H1A.15 protein.
Length = 654
Score = 29.5 bits (63), Expect = 5.0
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +3
Query: 636 SGGTEYFFVTSSAMTLCMILLNT-FWSIIFFSGFDEKNYLKILWVIISHFFVSFLSLLNS 812
SG T F+ TS+ T+ +L++ +I+F F+ +++ IL + ++FF S + +
Sbjct: 316 SGHTLDFYQTSANTTVTFAVLSSGILTILFIMKFEFRSWYFILVTLNTYFFPEKYSKILA 375
Query: 813 RELYAASILPSYXVLMITSYIAFRCA 890
+ SI + LM ++ + R A
Sbjct: 376 QLPVPLSICSAIFCLMFSTVLICRLA 401
>Z81031-4|CAF31468.2| 421|Caenorhabditis elegans Hypothetical
protein C02D4.2f protein.
Length = 421
Score = 28.7 bits (61), Expect = 8.8
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 663 TSSAMTLCMILLNTFWSIIFFSGFDEKNYLKILWVIISHFFVSFLSLLNS 812
TSS + LC I L+ +W+I + +K K + ++I V LS+L S
Sbjct: 132 TSSILNLCAIALDRYWAIHNPINYAQKRTTKFVCIVI--VIVWILSMLIS 179
>Z81031-3|CAF31467.1| 455|Caenorhabditis elegans Hypothetical
protein C02D4.2e protein.
Length = 455
Score = 28.7 bits (61), Expect = 8.8
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 663 TSSAMTLCMILLNTFWSIIFFSGFDEKNYLKILWVIISHFFVSFLSLLNS 812
TSS + LC I L+ +W+I + +K K + ++I V LS+L S
Sbjct: 143 TSSILNLCAIALDRYWAIHNPINYAQKRTTKFVCIVI--VIVWILSMLIS 190
>Z81031-2|CAF31464.1| 429|Caenorhabditis elegans Hypothetical
protein C02D4.2b protein.
Length = 429
Score = 28.7 bits (61), Expect = 8.8
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 663 TSSAMTLCMILLNTFWSIIFFSGFDEKNYLKILWVIISHFFVSFLSLLNS 812
TSS + LC I L+ +W+I + +K K + ++I V LS+L S
Sbjct: 140 TSSILNLCAIALDRYWAIHNPINYAQKRTTKFVCIVI--VIVWILSMLIS 187
>Z81031-1|CAB02718.4| 432|Caenorhabditis elegans Hypothetical
protein C02D4.2a protein.
Length = 432
Score = 28.7 bits (61), Expect = 8.8
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 663 TSSAMTLCMILLNTFWSIIFFSGFDEKNYLKILWVIISHFFVSFLSLLNS 812
TSS + LC I L+ +W+I + +K K + ++I V LS+L S
Sbjct: 143 TSSILNLCAIALDRYWAIHNPINYAQKRTTKFVCIVI--VIVWILSMLIS 190
>AF539814-1|AAN16459.1| 421|Caenorhabditis elegans tyramine
receptor short isoformSER-2a protein.
Length = 421
Score = 28.7 bits (61), Expect = 8.8
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 663 TSSAMTLCMILLNTFWSIIFFSGFDEKNYLKILWVIISHFFVSFLSLLNS 812
TSS + LC I L+ +W+I + +K K + ++I V LS+L S
Sbjct: 132 TSSILNLCAIALDRYWAIHNPINYAQKRTTKFVCIVI--VIVWILSMLIS 179
>AF539813-1|AAN16458.1| 444|Caenorhabditis elegans tyramine
receptor long isoformSER-2 protein.
Length = 444
Score = 28.7 bits (61), Expect = 8.8
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 663 TSSAMTLCMILLNTFWSIIFFSGFDEKNYLKILWVIISHFFVSFLSLLNS 812
TSS + LC I L+ +W+I + +K K + ++I V LS+L S
Sbjct: 132 TSSILNLCAIALDRYWAIHNPINYAQKRTTKFVCIVI--VIVWILSMLIS 179
>AF068713-2|AAC17805.1| 347|Caenorhabditis elegans Seven tm
receptor protein 260 protein.
Length = 347
Score = 28.7 bits (61), Expect = 8.8
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +3
Query: 642 GTEYFFVTSSAMTLCMILLNTFWSIIFFSGFDEKNYLKILWVIISHFFVSFLSLLNSREL 821
G+ +F + + ++ L+ S++F+ GF Y L ++ HF FLS+ N+R L
Sbjct: 66 GSAFFLIANFKQSIFPKLM-ACCSVLFYGGF----YGITLAILALHFIYRFLSITNNRHL 120
>AF016444-2|AAN73877.1| 320|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 10 protein.
Length = 320
Score = 28.7 bits (61), Expect = 8.8
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +3
Query: 444 FRYGMYL-LLRKTEAGLKEISENHEIGSNKLEMAYVSGLGFGTMSGA--FALVNVLADSI 614
+R G+YL LL+ T A + HE ++ M+Y G+ FG + A +LVN++ I
Sbjct: 132 YRLGIYLALLQVTIAFICTFIAFHEFSFDEPTMSYCIGVKFGEFNNAEIVSLVNLVVQII 191
>AC024796-7|AAN60505.2| 414|Caenorhabditis elegans Hypothetical
protein Y48G1C.11 protein.
Length = 414
Score = 28.7 bits (61), Expect = 8.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -3
Query: 682 RVIAELVTKKYSVPPLRPNVPGPIESANTLTSANAPLIVPNPRP 551
R + + K P P P P+ +NT+ + N P +P PRP
Sbjct: 343 RTVETPILKNSPSPSYTPFHPTPVHRSNTVRADNRP--IPPPRP 384
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,496,107
Number of Sequences: 27780
Number of extensions: 427922
Number of successful extensions: 1168
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1164
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3359895476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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