Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_A22
         (1320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    29   1.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   1.9  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   5.8  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    23   6.4  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    27   7.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    23   9.5  

>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 22/72 (30%), Positives = 36/72 (50%)
 Frame = -2

Query: 620 ETETKKMNVNYFTKTISRFHFLLFVILFSEIPSTS*GLSKTLETKKNQYVFKLKSFIVFN 441
           E E+++   +Y T  +     +L  +L S   S + G  +  E ++  Y F++     F 
Sbjct: 365 EVESERAPTSYLTSCLPSIKVILARVLES---SPAFGFIERNELEQLSYHFRICE--KFF 419

Query: 440 KEVSQNKMLTLF 405
           KE S+NKML LF
Sbjct: 420 KESSENKMLNLF 431


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.4 bits (48), Expect(2) = 1.9
 Identities = 7/8 (87%), Positives = 8/8 (100%)
 Frame = -1

Query: 957 KTPPPPPP 934
           K+PPPPPP
Sbjct: 730 KSPPPPPP 737



 Score = 23.4 bits (48), Expect(2) = 1.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 951 PPPPPPXP 928
           PPPPPP P
Sbjct: 761 PPPPPPPP 768


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 199 SNNIKFLCFFFLYFSYILRTSLLIFSFNF 113
           SN + F CFFF YFS     S L  S +F
Sbjct: 102 SNVVPFFCFFF-YFSLFSFFSFLFTSLHF 129


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 23.4 bits (48), Expect(2) = 6.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 951 PPPPPPXP 928
           PPPPPP P
Sbjct: 9   PPPPPPPP 16



 Score = 21.4 bits (43), Expect(2) = 6.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -1

Query: 948 PPPPPXPXXXK 916
           PPPPP P   K
Sbjct: 24  PPPPPPPGYVK 34


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 454 KLFSLNTYWFFFVSSV-LLKPQLVDGISENNITNN 555
           + FSL   +   V  + LLKP L+DG  ++ +T+N
Sbjct: 193 RTFSLENLYVLGVKGLELLKPVLLDGSEDDTLTSN 227


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 23.0 bits (47), Expect(2) = 9.5
 Identities = 10/27 (37%), Positives = 10/27 (37%)
 Frame = -1

Query: 1014 PXXPNPLFPXGXXXSXXXXKTPPPPPP 934
            P  P P             K PPPPPP
Sbjct: 290  PPLPPPSSRVSAAALAANKKRPPPPPP 316



 Score = 21.4 bits (43), Expect(2) = 9.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 957 KTPPPPPPXP 928
           K  PPPPP P
Sbjct: 308 KKRPPPPPPP 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,962,738
Number of Sequences: 5004
Number of extensions: 42397
Number of successful extensions: 257
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 723332792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)