Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_A21
         (1201 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch...    31   0.42 
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p...    29   1.3  
SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces pom...    27   3.9  
SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   5.2  

>SPAC4F10.18 |||WD repeat protein, human NUP37
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 30.7 bits (66), Expect = 0.42
 Identities = 21/70 (30%), Positives = 29/70 (41%)
 Frame = +1

Query: 235 DVNAAVVIPGEDGVMSVCDD*TVRVWLKRDSGXYXPXXCKYMPSGCTSMFYTPETRQLFI 414
           DV +A     E  + SV DD T+ +W   D G          P G +  F      QL +
Sbjct: 144 DVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSP-GISVQFRPSNPNQLIV 202

Query: 415 GQENGTVSEF 444
           G+ NG +  F
Sbjct: 203 GERNGNIRIF 212


>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = +1

Query: 268 DGVMSVCDD*TVRVWLKRDSGXYXPXXCKYMPSGCTSMFYTPETRQLFIGQENGTVSEFT 447
           DGVM+V D   V      DS    P   K +P    S  ++P+   ++IG+ NG V E+ 
Sbjct: 373 DGVMNVWDHRMV------DSVLKYPVP-KGVPPWAMSACWSPDGNNIYIGRRNGIVEEYN 425

Query: 448 L 450
           +
Sbjct: 426 I 426


>SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 375

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +1

Query: 232 DDVNAAVVIPGEDGVMSVCD---D*TVRVWLKRDSG 330
           DD N +++I  ED V S      +  V +WLK DSG
Sbjct: 100 DDYNFSIIIHSEDQVNSFIKYPFNRPVEIWLKLDSG 135


>SPAC1F3.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +2

Query: 548 PVVFIRICYHYGYILVYYCGLF*IIILYSNVILLLIPFLITIGEV 682
           P  + RICY Y  IL+ Y  LF II  Y  +++ L P    I  +
Sbjct: 45  PFFYDRICYDYKNILLKY-ELF-IIYYYYYLLICLSPHFFPIKRI 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,839,786
Number of Sequences: 5004
Number of extensions: 46071
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 647459150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)