Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_A21
         (1201 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47808-2|CAA87770.1|  415|Caenorhabditis elegans Hypothetical pr...    74   2e-13
AL021492-3|CAA16382.3|  893|Caenorhabditis elegans Hypothetical ...    29   6.5  

>Z47808-2|CAA87770.1|  415|Caenorhabditis elegans Hypothetical
           protein D2013.2 protein.
          Length = 415

 Score = 74.1 bits (174), Expect = 2e-13
 Identities = 34/89 (38%), Positives = 56/89 (62%)
 Frame = +1

Query: 199 PALLSKLXGCTDDVNAAVVIPGEDGVMSVCDD*TVRVWLKRDSGXYXPXXCKYMPSGCTS 378
           PALL ++ G    +N  +++  ++GV +  DD +VR++LKRD+  + P    +MP   TS
Sbjct: 21  PALLHRITGHVARINDVILLSKDEGVWTASDDRSVRLYLKRDNDQFWPSIHHFMPVAPTS 80

Query: 379 MFYTPETRQLFIGQENGTVSEFTLATDCN 465
           ++Y+ ET +L +G  NG V EF++A D N
Sbjct: 81  LYYSEETYKLLVGLINGNVYEFSVADDFN 109


>AL021492-3|CAA16382.3|  893|Caenorhabditis elegans Hypothetical
           protein Y45F10D.7 protein.
          Length = 893

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +1

Query: 205 LLSKLXGC-TDDVNAAVVIPGEDGVMSVCDD*TVRVWL 315
           L+ K+ G  +D++N    +PGE  ++S   D ++R+W+
Sbjct: 265 LIGKITGIHSDEINCLYFVPGEPIMLSASLDNSLRLWI 302


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,520,086
Number of Sequences: 27780
Number of extensions: 257787
Number of successful extensions: 482
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3297288728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)