Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_A19
         (1267 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch...    42   1e-04
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    27   5.5  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    27   5.5  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    26   9.6  

>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 245

 Score = 42.3 bits (95), Expect = 1e-04
 Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 5/157 (3%)
 Frame = +3

Query: 402 NKFALKSGYGKYLGVSKDGVVVGRSDAVGPMEQW-EPVWQDGKTAILS-SLNKFMSVTPD 575
           N   LKS  GKY+  SK G +    +AVG  EQW       G  A  S S  K+++++ +
Sbjct: 98  NTILLKSCLGKYMSCSKSGDLYCTQEAVGSQEQWIAENLGSGFWAWKSVSTKKYLTLSRE 157

Query: 576 -DDSVIA--KSVSAGENEYCIIRSNKAKEVNKAVLPAXXXXXXXXXXXXXXKKFQKFQDK 746
             D  IA        E ++ I    +  + NK+ L                ++ +    +
Sbjct: 158 KQDQAIACVSDTVIPEAKWRIRVQTRFLKKNKSSL--------FDNPTIHSRQLESMAGR 209

Query: 747 KLRLNDGSVTELKRAKIEGNLHETLLDRRSKMKADRY 857
           KL  ++     LK+A  EG LHE LLD R   ++D+Y
Sbjct: 210 KLSTDEKKT--LKKAFKEGVLHEALLDLRVSSRSDKY 244


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = -3

Query: 194 LIRFILLLVLAFFCFG---FVSFKN*LSTFHSSIFISHVFILXIKSQMYFTVGIY 39
           ++RF+LLL LAF CF     ++ +  L  + SSI++S        S + F+V IY
Sbjct: 716 ILRFLLLL-LAFLCFAMHILLTPEATLRKWASSIYLSFRLECVFISFLIFSVPIY 769


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -3

Query: 644 FITPYYTVLILTGTDTL 594
           F+ PY+T+L+L  TDT+
Sbjct: 315 FVAPYWTLLLLKDTDTI 331


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 18/76 (23%), Positives = 37/76 (48%)
 Frame = +3

Query: 351 GEGPSPEEIFTAFPAGENKFALKSGYGKYLGVSKDGVVVGRSDAVGPMEQWEPVWQDGKT 530
           G   + + I   F +   K+ +K  YGK++G+S + ++  R+D    M++     +  K 
Sbjct: 80  GNSEASKLISGTFHSIAYKYLVK--YGKHIGLSSNWLIADRNDTQAIMKRLLDSLKKAKN 137

Query: 531 AILSSLNKFMSVTPDD 578
            I S + +   +TP +
Sbjct: 138 PIASGI-RGQELTPQN 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,078,714
Number of Sequences: 5004
Number of extensions: 81276
Number of successful extensions: 217
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 687563588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)