Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_A19
         (1267 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0693 - 19926103-19926585                                         31   1.5  
09_06_0020 - 20267190-20267612,20269086-20269495,20269573-202697...    31   2.5  
03_05_0344 - 23316919-23317314,23317474-23317868,23320889-233213...    30   4.4  

>10_08_0693 - 19926103-19926585
          Length = 160

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = -3

Query: 161 FFCFGFVSFKN*LSTFHS 108
           FFCFGFV F++  STFH+
Sbjct: 94  FFCFGFVIFRSHRSTFHA 111


>09_06_0020 -
           20267190-20267612,20269086-20269495,20269573-20269747,
           20270833-20271066,20271164-20271265,20271354-20272091,
           20272204-20272321,20272417-20272667,20272768-20272932
          Length = 871

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 285 GNNCYVSALDNGLFTIGSPHGDGEGPSPEEI 377
           G++ YVS L +G   +   H +G  PSP E+
Sbjct: 772 GDSAYVSLLPSGFAILPDGHNNGASPSPAEV 802


>03_05_0344 -
           23316919-23317314,23317474-23317868,23320889-23321384,
           23322346-23322366
          Length = 435

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = +3

Query: 408 FALKSGYGKYLGVS--KDGVVVGRSDAVGPMEQWEPVWQDGKTAILSSLNKFMSVTPD 575
           F ++S Y   L +     G VVG S A    + W  +W     A+ S + K   + P+
Sbjct: 264 FTVRSAYKLALDIQTRSQGNVVGCSSAADGRKVWSDLWSTQAKALRSEMRKIWQLPPE 321


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,794,090
Number of Sequences: 37544
Number of extensions: 517259
Number of successful extensions: 1272
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3922562724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)