Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_A19
         (1267 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   4.3  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   4.3  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   9.9  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   9.9  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   9.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   9.9  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 443 PQVFSIP*FQSKFVFSC 393
           P  FS+P F ++++FSC
Sbjct: 54  PGPFSLPIFGTRWIFSC 70


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
            protein.
          Length = 381

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -1

Query: 1000 EYLXXFDGIL*-ITTVXNPTLYNPWSIQLRLLF 905
            E+L    G L   +T  NP LYN  SI+ R  F
Sbjct: 307  EWLYILSGCLYYFSTTINPILYNLMSIKYRNAF 339


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 445 TPKYFPYPDFKANLFSPAGKAV 380
           +PK  PYP++  N     G A+
Sbjct: 106 SPKLTPYPNWAQNKAGACGSAI 127


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 11/45 (24%), Positives = 20/45 (44%)
 Frame = -3

Query: 971 IDYYCNXSNPVQPLVNSIEAAFFRTICTMEIYKKILFTISISFHF 837
           +D Y N S     ++ + +       C  + Y  I++  SIS H+
Sbjct: 208 MDGYTNNSKWDFKVIKATKVLKMYACCPNDTYPMIVYEFSISRHY 252


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +3

Query: 486 GPMEQWEPVWQDGKTAILSSLNKFMSVTPDDDSVIAKSVSAGE 614
           GP   +   W +     L  L       P+   VIA SVSAGE
Sbjct: 568 GPRTTYCAFWNE----FLPKLKGIPDPXPNTCKVIASSVSAGE 606


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
 Frame = -2

Query: 354 HHHHEDFQL*ITHY--PMLIRSNYS 286
           HHHH+   L   HY  P  +  +YS
Sbjct: 353 HHHHQTQSLQHLHYRQPPTLSESYS 377


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 277,474
Number of Sequences: 438
Number of extensions: 6223
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43342743
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)