Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_A18
         (1286 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    32   0.20 
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    31   0.26 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.8  
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    28   2.4  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    28   3.2  
SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz...    27   4.2  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    27   5.6  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    27   5.6  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    27   7.4  

>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 31.9 bits (69), Expect = 0.20
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = +2

Query: 515 FECPVCFDYVLPPILQCQSGHLVCSSCRPKL 607
           F C VC D  L P+     GH  C  C   L
Sbjct: 604 FNCSVCLDPCLAPVFIIPCGHFTCQECMSML 634


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 31.5 bits (68), Expect = 0.26
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
 Frame = +2

Query: 440 SSCSVPGVPALVNAPTAMSADLASLFECPVCFDYVLPPILQCQSGHLVCSSCRPKLSC-- 613
           SS     V   ++    +  +++   EC +CF  +  P++    GH  C  C  +     
Sbjct: 142 SSSYETAVAEFLHMEDLLQENVSRELECQICFGMLYDPVVS-PCGHTFCGPCLMQALTQS 200

Query: 614 --CPTCR 628
             CPTCR
Sbjct: 201 PQCPTCR 207


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 407 STNIKRRGASGSSCSVPGVPAL-VNAPTAMSADLAS 511
           S N +RR  S + CSVPG  AL   A T +S  L S
Sbjct: 230 SENCRRRYQSSAKCSVPGFNALGTIAETVLSKSLNS 265


>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 465 RPS*TRPPPCLPTSPRCLSVPFASTMCC 548
           RPS  R  P + T+ RC+SV  AS++CC
Sbjct: 27  RPSLNRNDPKVITA-RCISVLLASSVCC 53


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 443 SCSVPGVPALVNAPTAMSADLASLFECPVCFDY 541
           S S PG  +     TA++   A+  ECP+CF Y
Sbjct: 125 SNSTPGSISADYRTTAITTIYANAMECPICFLY 157


>SPCC1919.03c |||AMP-activated protein kinase beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 298

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = +3

Query: 702 SNTGCTVTLVHTEKAEHEEACE-FRPYSCPCPGASCKWQGGLDQVMPHLMMSH--KSITX 872
           S  G + +  HT++       +  +PYS PC     +W+GG + V      S   K I  
Sbjct: 68  SQNGTSGSSGHTKRRSQTSGKKTHQPYSGPCVPTIIRWRGGGEVVYVTGSFSRWKKKIQL 127

Query: 873 LQGED 887
           L+ ED
Sbjct: 128 LKSED 132


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +1

Query: 241 PPR*L*WKSTSTRPADGRNPPWKAISEVSGACLGSNRGGLGDRR 372
           PP     K  ++   +G NP W   S  +G    S  G LG RR
Sbjct: 481 PPNSSRLKQRNSDLLNGINPQWSPFSSNTGKVFDSPTGSLGMRR 524


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -2

Query: 787 GQEYGLN-SQASSCSAFSVCTRVTVQPVLECLPGEHNITGDLFHCKVANISEGPTTRR 617
           G  Y  N +   + S   +C RVT++  L     E     D++H K+ N SE  +T+R
Sbjct: 157 GTAYDSNLADRITASFIELCKRVTLKGQLASPSSEFVSHLDMYHSKLLNKSEILSTKR 214


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +2

Query: 503 LASLFECPVCFDYVLPPILQCQSGHLVCSSC 595
           L    +C +C D V   ++    GH +C  C
Sbjct: 740 LIETLQCSLCMDVVAELLIIVPCGHFLCREC 770


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,934,096
Number of Sequences: 5004
Number of extensions: 76414
Number of successful extensions: 199
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 701473834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)