Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_A18
         (1286 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   2.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   3.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   3.3  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    23   4.3  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    23   4.3  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 587 STPGAHSDTVGWGAAH 540
           STPG H  T+G G +H
Sbjct: 410 STPGPHHHTMGHGHSH 425


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 9/37 (24%), Positives = 15/37 (40%)
 Frame = +2

Query: 425  RGASGSSCSVPGVPALVNAPTAMSADLASLFECPVCF 535
            R   G S     + +    P    +D   L++C VC+
Sbjct: 1036 RAKPGKSSGAAAMASAAPMPACFDSDRERLYDCYVCY 1072


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 3.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 757  KLVNSGRTLVLVPGHPASGKVVLIK 831
            KLV+ G+   L+ GH   G+ + IK
Sbjct: 1026 KLVSPGQIKSLLTGHGLQGQTIFIK 1050


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 702 NVYQGNITLLATFSIARLRIFPRGPRHVGQQDSLGRQLE 586
           N++     LL T  + R+   PRG     + D L ++LE
Sbjct: 123 NIFLPEDCLLFTIELDRVLESPRGKYEFSKYDKLKKKLE 161


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 4.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 702 NVYQGNITLLATFSIARLRIFPRGPRHVGQQDSLGRQLE 586
           N++     LL T  + R+   PRG     + D L ++LE
Sbjct: 138 NIFLPEDCLLFTIELDRVLESPRGKYEFSKYDKLKKKLE 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 276,104
Number of Sequences: 438
Number of extensions: 5575
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 44183184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)