Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_A16
(1265 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0711 + 31388369-31388799,31388907-31389079,31389852-313899... 35 0.16
03_06_0627 - 35172246-35172349,35172903-35173005,35173107-351731... 33 0.63
10_08_0448 + 18015609-18016052,18017147-18017248,18017332-180174... 31 2.5
08_01_0879 - 8633063-8633080,8633221-8633399,8633581-8634238 31 2.5
01_01_0677 + 5201089-5201177,5201325-5202183,5202321-5202794 31 2.5
02_02_0677 + 12859101-12859413,12862450-12862817 29 5.9
01_02_0071 + 10822008-10822011,10822219-10822364,10822452-108225... 29 5.9
09_03_0089 + 12265916-12267232 29 7.8
03_05_1072 + 30148360-30148833,30148959-30149036,30149156-301492... 29 7.8
02_05_0556 - 29940146-29940158,29941060-29941240,29941271-29941670 29 7.8
>01_06_0711 +
31388369-31388799,31388907-31389079,31389852-31389937,
31390041-31390090,31390598-31390665,31391490-31391674,
31391884-31391970,31392075-31392169,31392509-31392635
Length = 433
Score = 34.7 bits (76), Expect = 0.16
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -3
Query: 714 PSGGTAPAAALGDPEGHHQVLPVLDPELRYGGGGSSHCATD 592
P GG +PA+A D + LP+L + GGGG SH D
Sbjct: 68 PPGGASPASAASDDDSEEFELPLLPSD--SGGGGGSHLPMD 106
>03_06_0627 -
35172246-35172349,35172903-35173005,35173107-35173190,
35173504-35173599,35173686-35173736,35173805-35173945,
35174098-35174154,35175089-35175163,35176255-35176527,
35176608-35176667,35176754-35176846,35177196-35177348
Length = 429
Score = 32.7 bits (71), Expect = 0.63
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 205 CYSICHKDNDPQENVINERTHLLEVTE 285
C ICH+D PQ ++N TH L++ +
Sbjct: 204 CVGICHRDIKPQNVLVNPHTHQLKICD 230
>10_08_0448 +
18015609-18016052,18017147-18017248,18017332-18017475,
18017555-18017705,18017793-18017820,18018456-18018621,
18018701-18018764,18019320-18019423,18019572-18019710,
18020114-18020232,18020333-18020485,18020565-18020654,
18020952-18021029,18021671-18021829,18021914-18022117,
18022209-18022414,18022495-18022630,18022859-18022898,
18023329-18023408,18023569-18024228
Length = 1088
Score = 30.7 bits (66), Expect = 2.5
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +1
Query: 202 CCYSICHKDNDPQENVINERTHLLEVTEQQQETLVPVVSA 321
CCYSI D+ + E +++ ++++ Q+ + +VSA
Sbjct: 384 CCYSIAGVDDAQMFRTVTEAMNIVHISKEDQDNVFTMVSA 423
>08_01_0879 - 8633063-8633080,8633221-8633399,8633581-8634238
Length = 284
Score = 30.7 bits (66), Expect = 2.5
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -3
Query: 726 IKRLPSGGTAPAAALGDPEGHHQVLPVLDPELRYGGGG 613
+ +LPS A A G HH P P L +GGGG
Sbjct: 114 LHQLPSAAAAAGAGGGGDYYHHHHQPSSSPFLMHGGGG 151
>01_01_0677 + 5201089-5201177,5201325-5202183,5202321-5202794
Length = 473
Score = 30.7 bits (66), Expect = 2.5
Identities = 20/50 (40%), Positives = 24/50 (48%)
Frame = -3
Query: 732 VLIKRLPSGGTAPAAALGDPEGHHQVLPVLDPELRYGGGGSSHCATDQLL 583
V I+ SGG A AA G Q L+ +LR GGGG TD +L
Sbjct: 384 VEIEVTTSGGGAGAADAAAAAGGDQETCTLNVDLRGGGGGGGMSTTDVVL 433
>02_02_0677 + 12859101-12859413,12862450-12862817
Length = 226
Score = 29.5 bits (63), Expect = 5.9
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = -3
Query: 642 DPELRYGGGGSSHCATDQLLICGRYWGTAE*GYSL 538
DPE GGGG+S TDQ+L + GYSL
Sbjct: 74 DPESGGGGGGASLSPTDQVLFSRHLLEASLMGYSL 108
>01_02_0071 +
10822008-10822011,10822219-10822364,10822452-10822544,
10822722-10822781,10822855-10823127,10823229-10823303,
10823419-10823475,10823593-10823733,10823813-10823863,
10823905-10823955,10823956-10824051,10824159-10824242,
10824330-10824432,10824518-10824600
Length = 438
Score = 29.5 bits (63), Expect = 5.9
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +1
Query: 205 CYSICHKDNDPQENVINERTHLLEVTE 285
C +CH+D PQ ++N H L++ +
Sbjct: 203 CVGVCHRDIKPQNILVNPHNHQLKLCD 229
>09_03_0089 + 12265916-12267232
Length = 438
Score = 29.1 bits (62), Expect = 7.8
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = +2
Query: 614 PPPPYRSSGSSTGRTWWCPSGSPRAAAGA 700
P PPY SS SST + PS S AAA A
Sbjct: 229 PFPPYTSSSSSTPLSTSTPSSSNLAAANA 257
>03_05_1072 +
30148360-30148833,30148959-30149036,30149156-30149255,
30149371-30149501,30149604-30149855
Length = 344
Score = 29.1 bits (62), Expect = 7.8
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 720 RLPSGGTAPAAALGDPEGHHQVLPVLDPELRYGGGG 613
RL G TA A GD HH+++P + GGGG
Sbjct: 17 RLLRGATAKAFH-GDGSSHHRMMPSSSSSVAAGGGG 51
>02_05_0556 - 29940146-29940158,29941060-29941240,29941271-29941670
Length = 197
Score = 29.1 bits (62), Expect = 7.8
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Frame = +2
Query: 608 DEPPP---PYRSSGSSTGRTWWCPSGSPRAAA 694
DEPPP P + S+T R WW PR AA
Sbjct: 6 DEPPPAPAPPQPKQSTTARRWWM-KADPRKAA 36
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,460,424
Number of Sequences: 37544
Number of extensions: 423003
Number of successful extensions: 1832
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1823
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3922562724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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