Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_A16
         (1265 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical ...    36   0.080
AC084197-20|AAG23472.1|  270|Caenorhabditis elegans Hypothetical...    31   2.3  
U46668-3|AAA93346.1|  205|Caenorhabditis elegans Hypothetical pr...    29   9.2  

>AL031621-2|CAA20934.2| 1000|Caenorhabditis elegans Hypothetical
           protein F28H6.4 protein.
          Length = 1000

 Score = 35.5 bits (78), Expect = 0.080
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +3

Query: 183 KNSRNGXXXXXXPQRQRPTGERYKRKDTSTRSNGAATGDAGTCGISVHTTE 335
           + S+N       PQ+ RP G  YK K    RSNG+ATG +     +++T E
Sbjct: 530 ETSKNSIKYPYVPQQSRPRGY-YKMKKLPARSNGSATGSSNDELSAIYTHE 579


>AC084197-20|AAG23472.1|  270|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.16 protein.
          Length = 270

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +1

Query: 229 NDPQENVINERTHLLEVTEQQQETLVPVVSASTPPRKPDEQTALNRILHETANNV 393
           NDPQ   I E+ H      +  E  +  +  + P  K +EQT ++  L E   N+
Sbjct: 93  NDPQSAKIIEKAHFAADLRKLGENSIYAIIENVPDCKKEEQTTIDASLMENLANL 147


>U46668-3|AAA93346.1|  205|Caenorhabditis elegans Hypothetical
           protein F38E9.4 protein.
          Length = 205

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +1

Query: 229 NDPQENVINERTHLLEVTEQQQETLVPVVSASTPPRKPDEQTALNRILHE 378
           NDPQ   I E+ H      +  E  +  +  + P  K +EQT ++  L E
Sbjct: 93  NDPQSVKIIEKAHFAADLRKLGENSIYAIIENVPDCKKEEQTTIDASLME 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,445,596
Number of Sequences: 27780
Number of extensions: 326815
Number of successful extensions: 1165
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1165
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3526846804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)