Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_A16
         (1265 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   9.9  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   9.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   9.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 22/74 (29%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
 Frame = +3

Query: 219  PQRQRPTGERYKRKDTSTRSNGAATGDAGTCGI-SVHTTEETRRTDCFE*DTS*DCK*CD 395
            P  +RP  ER    D S   +     D G+  + S  T     R    + D++ D    D
Sbjct: 1364 PVPERP--ERVPTVDLSPSPSDRGRNDDGSDRLTSPPTPLSISRAGSRDEDSTRDSTKLD 1421

Query: 396  RRGRAGPVHTGGQR 437
            R  R   VH GGQ+
Sbjct: 1422 RSSREREVHNGGQQ 1435


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 101 IKIENIVGMPLTVDVRLTXXEWDLKEFP 18
           I+ +N+V + + +    T  EWD+ E P
Sbjct: 185 IRGKNVVDIGVDLSEFYTSVEWDILEVP 212


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 891 RCRIEFXCLIAFIDVAVRC 947
           RC  +  CL +F++  V C
Sbjct: 142 RCNFKAYCLFSFLNTIVYC 160


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 9.9
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 268 LLEVTEQQQETLVPVVSASTPPRKP 342
           L EV E +     P VS S+PPR+P
Sbjct: 120 LCEVPESRDGP--PSVSLSSPPREP 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,966
Number of Sequences: 438
Number of extensions: 4457
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 43342743
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)