Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_A14
(1418 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1130 - 34319558-34319603,34320236-34320335,34320498-343205... 34 0.31
05_02_0094 + 6562212-6563399 32 1.3
11_08_0102 - 28354880-28355056,28355159-28355376,28355634-283557... 31 2.2
08_02_0885 + 22268287-22268988 30 3.9
06_01_0768 + 5742938-5743196,5743291-5744729 30 5.1
10_08_0207 - 15822080-15822190,15822886-15822945,15823021-158231... 29 8.9
07_03_0532 + 19171290-19171394,19173122-19173302,19173761-191742... 29 8.9
02_05_0690 - 30943184-30943305,30944048-30944459,30944549-309446... 29 8.9
>02_05_1130 -
34319558-34319603,34320236-34320335,34320498-34320577,
34320680-34320840,34321602-34321731,34322055-34322230,
34322873-34323068,34323768-34323889,34324376-34324468,
34324672-34324740,34325259-34325423,34325771-34326061
Length = 542
Score = 33.9 bits (74), Expect = 0.31
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = -2
Query: 550 PSSANPRQLCLVASLNPHGGARIDASLSTSPLEAYKLKAYSSRPHPATCRGTCPVV 383
PS+ +P A+ +P GG A+ S PL A + RP P RG C VV
Sbjct: 12 PSNPSPSSRSAAAAFSPRGGVHFAAARSGLPL-ACAAPRHRGRPPPRRRRGGCLVV 66
>05_02_0094 + 6562212-6563399
Length = 395
Score = 31.9 bits (69), Expect = 1.3
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = -2
Query: 550 PSSANPRQLCLVASLNPHGGARIDASLSTSPLEAYKLKAYSSRPHPATCRGTCPVVRSEF 371
PSS PR+ L ++ +G AR+ P A + A+ + P P T R ++ +
Sbjct: 9 PSSLRPREPLLCRVISAYGRARL-------PAAARRAFAHPAFPAPRTARALNTLLHALL 61
Query: 370 PGVEP-PGVLAECRSLGTSHP 311
P P +L+ECR G HP
Sbjct: 62 ACRAPLPELLSECRGSGI-HP 81
>11_08_0102 -
28354880-28355056,28355159-28355376,28355634-28355712,
28356451-28356519,28356602-28356681,28356818-28356925,
28357103-28357169,28357894-28357959,28358042-28358119,
28358198-28358250,28359542-28359575,28359851-28359865,
28360082-28360109,28360628-28360716,28361688-28361810,
28362192-28362296,28362381-28362485,28362924-28363139,
28364656-28364845,28365193-28365418,28366096-28366162
Length = 730
Score = 31.1 bits (67), Expect = 2.2
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Frame = +1
Query: 343 LALPAVQLLETPIVQLDKFLCKSLDVVEKSMPSIYMPPEEMYSETRQYV--LRRADSVTR 516
L + A L T +++KF+ K+LD E + +Y+ PE++ S++++++ L + R
Sbjct: 168 LGIQAYMLASTTNKEVEKFVYKALDKGEGELKILYVTPEKI-SKSKRFMSKLEKCHHAGR 226
Query: 517 LGTAVLD 537
L +D
Sbjct: 227 LSLIAID 233
>08_02_0885 + 22268287-22268988
Length = 233
Score = 30.3 bits (65), Expect = 3.9
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +2
Query: 671 LKGRRAGPEQPRRCSTEPGSRGSC--RGDSPGKLWPK 775
+KG+ A P PRRC GS +C R + P + W K
Sbjct: 51 VKGKTAIPATPRRCRRPDGSNPACKMRWERPPEGWMK 87
>06_01_0768 + 5742938-5743196,5743291-5744729
Length = 565
Score = 29.9 bits (64), Expect = 5.1
Identities = 18/49 (36%), Positives = 21/49 (42%)
Frame = -3
Query: 318 LTQGHRPTKERVGLPYFEVQFFCHSNTGHDDRYGCNP*DHFKIRHGWLI 172
L Q RP LPY V H T HD + C+ HF R WL+
Sbjct: 249 LVQSDRPATSVSELPYVFVDLD-HGCTYHDKLFYCDDERHFLHRAPWLL 296
>10_08_0207 -
15822080-15822190,15822886-15822945,15823021-15823181,
15825573-15825629,15826521-15826584
Length = 150
Score = 29.1 bits (62), Expect = 8.9
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -3
Query: 435 HTLLDHIQRLAEELVQLYDRSFQELNRREC*LNA 334
H+ LD ++R EE+ +LY F+ L R++ +NA
Sbjct: 72 HSELDKLKREVEEMKKLYKELFESLARKDKDVNA 105
>07_03_0532 +
19171290-19171394,19173122-19173302,19173761-19174245,
19174877-19176283,19176413-19176628
Length = 797
Score = 29.1 bits (62), Expect = 8.9
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +1
Query: 826 VAKDPVLAWKKAKELYASLSQXEPENQARPVTLEXLMVLLTREXAXRSCI 975
VA++ VL W+KA++ ASL A+ TLE +V L + A + C+
Sbjct: 89 VAEEAVLGWEKAEKEIASLKTQLNAATAKNSTLEDRIVHL--DGALKECV 136
>02_05_0690 -
30943184-30943305,30944048-30944459,30944549-30944610,
30944724-30944787,30944880-30944947,30945039-30945168,
30945276-30945341,30945794-30946369
Length = 499
Score = 29.1 bits (62), Expect = 8.9
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 202 VSRVASIPIVVSGIGVTEKLYFKIRESNPLFRWSMSLGEKSLATGIQLALP 354
V R+ I V+S + +K+ + P FRW S G+ G+ +A+P
Sbjct: 304 VRRLYDIANVLSSLNFIDKIQ-QADSRKPAFRWLGSAGKPKAENGVTIAVP 353
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,874,588
Number of Sequences: 37544
Number of extensions: 616753
Number of successful extensions: 1884
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1883
length of database: 14,793,348
effective HSP length: 85
effective length of database: 11,602,108
effective search space used: 4490015796
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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