Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_A13
         (1344 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos...    44   4e-05
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    30   0.63 
SPAC3H1.03 |mug151||transcriptional regulator, HCNGP-like |Schiz...    27   4.5  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    27   4.5  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.5  

>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
            Ups1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 54/238 (22%), Positives = 97/238 (40%), Gaps = 9/238 (3%)
 Frame = +3

Query: 327  EDYQRIFRENNFETIFVEPLQFIYINIEELSQKL--LQNDYDGMILTSPRAVEAVSKCW- 497
            + Y   F +   +T F+  L+   ++ E+L  KL  ++  Y G+I+TS R  E + +   
Sbjct: 15   DPYVEAFEKYGRDTAFIPVLRHKRVHEEQLRDKLKNVRKTYCGLIVTSQRVSETLDEALK 74

Query: 498  --DPT-KFVIWNSKDVYTVGEMSSQKIKXXXXXXXXXXXXXNAENLSKIILK---DKKKT 659
              D T +  I     ++TVG  +   I+               E L+ +I +     K+ 
Sbjct: 75   QEDETERQKILMETPIFTVGPATDDSIRRLGFQQTHGKDCGRGEVLADLIEEWYTTTKQH 134

Query: 660  STFLFPCGNLRSETIPNMLQSEGITLDAITVYETQENENLKALLMELNNLNDSPSGLAFF 839
               LF  G    + I   L  + +  D++ VY TQE EN +  + +    + +   +  F
Sbjct: 135  KPLLFLVGEKHRDIIQRKLGDDRV--DSLIVYATQELENTETQIKDTIRKHPTIDWIVAF 192

Query: 840  XPSGCEYIHRQLXTFXNRWSLLPHLXXGNSTXHKMENXGVEIAGVXXKPKAESLXEXV 1013
             P+    I   L TF  + + +     G +T   ++  G +   V   P  ESL   +
Sbjct: 193  SPTS---ICSLLNTFELKIATI-----GPTTGDYLKKLGTQPNVVSPAPNPESLASSI 242


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
 Frame = +3

Query: 618 ENLSKIILKDKKKTSTFLFPCGNLRSETIPNMLQSEGITLDAITVYETQENENLKALLME 797
           ++L ++  +D+K    FL   GNL    + N ++ E +      + ET+EN  L ++++E
Sbjct: 518 KSLLQMFAEDRK----FLNSRGNLIIRQLCNYIEGERVYTSFAGILETEENLELASIMVE 573

Query: 798 L--NNLNDSP 821
           +  NNL  +P
Sbjct: 574 VLNNNLFTAP 583


>SPAC3H1.03 |mug151||transcriptional regulator, HCNGP-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 17/47 (36%), Positives = 20/47 (42%)
 Frame = +3

Query: 423 KLLQNDYDGMILTSPRAVEAVSKCWDPTKFVIWNSKDVYTVGEMSSQ 563
           KLL N  D + +  PR        WDPT F     K+VY      SQ
Sbjct: 77  KLLDNLQDFLDIKEPRGTMISKDMWDPTDF----HKNVYASALSKSQ 119


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 521 ELERCVHSWRDELSKNKIVTRFGRARGYS 607
           ++ R V+ W+ E+ +NK + R GR+R +S
Sbjct: 133 DMHRQVYRWQQEVDQNKQIRR-GRSRSFS 160


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 224 VNSNLNCL*LFVTNKFFSNRYTYNLYWCK-VFEIYMTSINIVKF 96
           VNSN++     ++N FF     + +Y+CK   E   T  +I+KF
Sbjct: 56  VNSNIS---RNISNTFFKKSIFFFVYYCKQALEFISTVFSIIKF 96


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,868,002
Number of Sequences: 5004
Number of extensions: 77576
Number of successful extensions: 172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 739230216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)