Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_A13
(1344 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
J03824-1|AAA60273.1| 265|Homo sapiens UROS protein. 109 2e-23
BC002573-1|AAH02573.1| 265|Homo sapiens uroporphyrinogen III sy... 109 2e-23
AL360176-2|CAI12087.1| 265|Homo sapiens uroporphyrinogen III sy... 109 2e-23
AF230665-1|AAG36795.1| 265|Homo sapiens uroporphyrinogen III sy... 109 2e-23
AL360176-3|CAI12088.1| 185|Homo sapiens uroporphyrinogen III sy... 94 9e-19
AL360176-5|CAI12090.1| 133|Homo sapiens uroporphyrinogen III sy... 54 9e-07
AL360176-4|CAI12089.1| 139|Homo sapiens uroporphyrinogen III sy... 54 1e-06
Z97054-12|CAI42656.1| 3407|Homo sapiens upstream regulatory elem... 32 4.1
Z97054-10|CAI42654.1| 4374|Homo sapiens upstream regulatory elem... 32 4.1
Z94044-4|CAI42354.1| 4374|Homo sapiens upstream regulatory eleme... 32 4.1
DQ097177-1|AAY98258.1| 4374|Homo sapiens Mcl-1 ubiquitin ligase ... 32 4.1
AY929612-1|AAX24125.1| 4374|Homo sapiens LASU1 protein. 32 4.1
AY772009-1|AAV90838.1| 4374|Homo sapiens ARF-binding protein 1 p... 32 4.1
AL592046-4|CAI39581.1| 3407|Homo sapiens upstream regulatory ele... 32 4.1
AL592046-3|CAI39580.1| 4374|Homo sapiens upstream regulatory ele... 32 4.1
AB071605-1|BAC06833.1| 3360|Homo sapiens HECT domain protein LAS... 32 4.1
AB046798-1|BAB13404.1| 1202|Homo sapiens KIAA1578 protein protein. 32 4.1
AB002310-1|BAA20771.2| 3192|Homo sapiens KIAA0312 protein. 32 4.1
BC051751-1|AAH51751.1| 1147|Homo sapiens replication factor C (a... 31 7.2
AY600371-1|AAS94325.1| 1147|Homo sapiens replication factor C (a... 31 7.2
AK128044-1|BAC87247.1| 1135|Homo sapiens protein ( Homo sapiens ... 31 9.5
AK022533-1|BAB14082.1| 1079|Homo sapiens protein ( Homo sapiens ... 31 9.5
AC012442-2|AAX81999.1| 1135|Homo sapiens unknown protein. 31 9.5
>J03824-1|AAA60273.1| 265|Homo sapiens UROS protein.
Length = 265
Score = 109 bits (262), Expect = 2e-23
Identities = 72/260 (27%), Positives = 116/260 (44%), Gaps = 17/260 (6%)
Frame = +3
Query: 297 MKIVLFKGESED------YQRIFRENNFETIFVEPLQFIYINIEELSQKLLQ-NDYDGMI 455
MK++L K ED Y R E + L F ++++ S+KL DY G+I
Sbjct: 1 MKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLI 60
Query: 456 LTSPRAVEAVSKC---------WDPTKFVIWNSKDVYTVGEMSSQKIKXXXXXXXXXXXX 608
TSPRAVEA C W+ + WN+K VY VG ++ +
Sbjct: 61 FTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKIGLDTEGETCG 120
Query: 609 XNAENLSKIILKDKKKTSTFLFPCGNLRSETIPNMLQSEGITLDAITVYETQENENLKAL 788
NAE L++ I + LFPCGNL+ E +P L+ +GI +++ITVY+T + ++
Sbjct: 121 -NAEKLAEYICSRESSALPLLFPCGNLKREILPKALKDKGIAMESITVYQTVAHPGIQGN 179
Query: 789 LMELNNLNDSPSGLAFFXPSGCEYIHRQLXTF-XNRWSLLPHLXXGNSTXHKMENXGVEI 965
L + P+ + FF PSG Y + + + + G +T + G+ +
Sbjct: 180 LNSYYSQQGVPASITFFSPSGLTYSLKHIQELSGDNIDQIKFAAIGPTTARALAAQGLPV 239
Query: 966 AGVXXKPKAESLXEXVXKXL 1025
+ P ++L + K L
Sbjct: 240 SCTAESPTPQALATGIRKAL 259
>BC002573-1|AAH02573.1| 265|Homo sapiens uroporphyrinogen III
synthase (congenital erythropoietic porphyria) protein.
Length = 265
Score = 109 bits (262), Expect = 2e-23
Identities = 72/260 (27%), Positives = 116/260 (44%), Gaps = 17/260 (6%)
Frame = +3
Query: 297 MKIVLFKGESED------YQRIFRENNFETIFVEPLQFIYINIEELSQKLLQ-NDYDGMI 455
MK++L K ED Y R E + L F ++++ S+KL DY G+I
Sbjct: 1 MKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLI 60
Query: 456 LTSPRAVEAVSKC---------WDPTKFVIWNSKDVYTVGEMSSQKIKXXXXXXXXXXXX 608
TSPRAVEA C W+ + WN+K VY VG ++ +
Sbjct: 61 FTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKIGLDTEGETCG 120
Query: 609 XNAENLSKIILKDKKKTSTFLFPCGNLRSETIPNMLQSEGITLDAITVYETQENENLKAL 788
NAE L++ I + LFPCGNL+ E +P L+ +GI +++ITVY+T + ++
Sbjct: 121 -NAEKLAEYICSRESSALPLLFPCGNLKREILPKALKDKGIAMESITVYQTVAHPGIQGN 179
Query: 789 LMELNNLNDSPSGLAFFXPSGCEYIHRQLXTF-XNRWSLLPHLXXGNSTXHKMENXGVEI 965
L + P+ + FF PSG Y + + + + G +T + G+ +
Sbjct: 180 LNSYYSQQGVPASITFFSPSGLTYSLKHIQELSGDNIDQIKFAAIGPTTARALAAQGLPV 239
Query: 966 AGVXXKPKAESLXEXVXKXL 1025
+ P ++L + K L
Sbjct: 240 SCTAESPTPQALATGIRKAL 259
>AL360176-2|CAI12087.1| 265|Homo sapiens uroporphyrinogen III
synthase (congenital erythropoietic porphyria) protein.
Length = 265
Score = 109 bits (262), Expect = 2e-23
Identities = 72/260 (27%), Positives = 116/260 (44%), Gaps = 17/260 (6%)
Frame = +3
Query: 297 MKIVLFKGESED------YQRIFRENNFETIFVEPLQFIYINIEELSQKLLQ-NDYDGMI 455
MK++L K ED Y R E + L F ++++ S+KL DY G+I
Sbjct: 1 MKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLI 60
Query: 456 LTSPRAVEAVSKC---------WDPTKFVIWNSKDVYTVGEMSSQKIKXXXXXXXXXXXX 608
TSPRAVEA C W+ + WN+K VY VG ++ +
Sbjct: 61 FTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKIGLDTEGETCG 120
Query: 609 XNAENLSKIILKDKKKTSTFLFPCGNLRSETIPNMLQSEGITLDAITVYETQENENLKAL 788
NAE L++ I + LFPCGNL+ E +P L+ +GI +++ITVY+T + ++
Sbjct: 121 -NAEKLAEYICSRESSALPLLFPCGNLKREILPKALKDKGIAMESITVYQTVAHPGIQGN 179
Query: 789 LMELNNLNDSPSGLAFFXPSGCEYIHRQLXTF-XNRWSLLPHLXXGNSTXHKMENXGVEI 965
L + P+ + FF PSG Y + + + + G +T + G+ +
Sbjct: 180 LNSYYSQQGVPASITFFSPSGLTYSLKHIQELSGDNIDQIKFAAIGPTTARALAAQGLPV 239
Query: 966 AGVXXKPKAESLXEXVXKXL 1025
+ P ++L + K L
Sbjct: 240 SCTAESPTPQALATGIRKAL 259
>AF230665-1|AAG36795.1| 265|Homo sapiens uroporphyrinogen III
synthase protein.
Length = 265
Score = 109 bits (262), Expect = 2e-23
Identities = 72/260 (27%), Positives = 116/260 (44%), Gaps = 17/260 (6%)
Frame = +3
Query: 297 MKIVLFKGESED------YQRIFRENNFETIFVEPLQFIYINIEELSQKLLQ-NDYDGMI 455
MK++L K ED Y R E + L F ++++ S+KL DY G+I
Sbjct: 1 MKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLI 60
Query: 456 LTSPRAVEAVSKC---------WDPTKFVIWNSKDVYTVGEMSSQKIKXXXXXXXXXXXX 608
TSPRAVEA C W+ + WN+K VY VG ++ +
Sbjct: 61 FTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKIGLDTEGETCG 120
Query: 609 XNAENLSKIILKDKKKTSTFLFPCGNLRSETIPNMLQSEGITLDAITVYETQENENLKAL 788
NAE L++ I + LFPCGNL+ E +P L+ +GI +++ITVY+T + ++
Sbjct: 121 -NAEKLAEYICSRESSALPLLFPCGNLKREILPKALKDKGIAMESITVYQTVAHPGIQGN 179
Query: 789 LMELNNLNDSPSGLAFFXPSGCEYIHRQLXTF-XNRWSLLPHLXXGNSTXHKMENXGVEI 965
L + P+ + FF PSG Y + + + + G +T + G+ +
Sbjct: 180 LNSYYSQQGVPASITFFSPSGLTYSLKHIQELSGDNIDQIKFAAIGPTTARALAAQGLPV 239
Query: 966 AGVXXKPKAESLXEXVXKXL 1025
+ P ++L + K L
Sbjct: 240 SCTAESPTPQALATGIRKAL 259
>AL360176-3|CAI12088.1| 185|Homo sapiens uroporphyrinogen III
synthase (congenital erythropoietic porphyria) protein.
Length = 185
Score = 94.3 bits (224), Expect = 9e-19
Identities = 51/150 (34%), Positives = 75/150 (50%), Gaps = 9/150 (6%)
Frame = +3
Query: 438 DYDGMILTSPRAVEAVSKC---------WDPTKFVIWNSKDVYTVGEMSSQKIKXXXXXX 590
DY G+I TSPRAVEA C W+ + WN+K VY VG ++ +
Sbjct: 27 DYGGLIFTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVSKIGLDT 86
Query: 591 XXXXXXXNAENLSKIILKDKKKTSTFLFPCGNLRSETIPNMLQSEGITLDAITVYETQEN 770
NAE L++ I + LFPCGNL+ E +P L+ +GI +++ITVY+T +
Sbjct: 87 EGETCG-NAEKLAEYICSRESSALPLLFPCGNLKREILPKALKDKGIAMESITVYQTVAH 145
Query: 771 ENLKALLMELNNLNDSPSGLAFFXPSGCEY 860
++ L + P+ + FF PSG Y
Sbjct: 146 PGIQGNLNSYYSQQGVPASITFFSPSGLTY 175
>AL360176-5|CAI12090.1| 133|Homo sapiens uroporphyrinogen III
synthase (congenital erythropoietic porphyria) protein.
Length = 133
Score = 54.4 bits (125), Expect = 9e-07
Identities = 41/134 (30%), Positives = 58/134 (43%), Gaps = 16/134 (11%)
Frame = +3
Query: 297 MKIVLFKGESED------YQRIFRENNFETIFVEPLQFIYINIEELSQKLLQ-NDYDGMI 455
MK++L K ED Y R E + L F ++++ S+KL DY G+I
Sbjct: 1 MKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLI 60
Query: 456 LTSPRAVEAVSKC---------WDPTKFVIWNSKDVYTVGEMSSQKIKXXXXXXXXXXXX 608
TSPRAVEA C W+ + WN+K VY VG ++ +
Sbjct: 61 FTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVS-KIGLDTEGETC 119
Query: 609 XNAENLSKIILKDK 650
NAE L++ I K
Sbjct: 120 GNAEKLAEYICSSK 133
>AL360176-4|CAI12089.1| 139|Homo sapiens uroporphyrinogen III
synthase (congenital erythropoietic porphyria) protein.
Length = 139
Score = 54.0 bits (124), Expect = 1e-06
Identities = 41/140 (29%), Positives = 60/140 (42%), Gaps = 16/140 (11%)
Frame = +3
Query: 297 MKIVLFKGESED------YQRIFRENNFETIFVEPLQFIYINIEELSQKLLQ-NDYDGMI 455
MK++L K ED Y R E + L F ++++ S+KL DY G+I
Sbjct: 1 MKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLI 60
Query: 456 LTSPRAVEAVSKC---------WDPTKFVIWNSKDVYTVGEMSSQKIKXXXXXXXXXXXX 608
TSPRAVEA C W+ + WN+K VY VG ++ +
Sbjct: 61 FTSPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVYVVGNATASLVS-KIGLDTEGETC 119
Query: 609 XNAENLSKIILKDKKKTSTF 668
NAE L++ I ++ F
Sbjct: 120 GNAEKLAEYICSSEEVKGIF 139
>Z97054-12|CAI42656.1| 3407|Homo sapiens upstream regulatory element
binding protein 1 (UREB1) protein.
Length = 3407
Score = 32.3 bits (70), Expect = 4.1
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -3
Query: 844 GXKNAKPLGLSFKLFNSIKRAFKFSFSCV---SYTVIASNVIPSDCSMLGMVSDLKLPH 677
G K P +L + R++ + + SYTV S +I DCS+L V D LPH
Sbjct: 1094 GSKPLMPTSTILRLLAELVRSYVGIATLIANYSYTVGQSELIKEDCSVLAFVLDHLLPH 1152
>Z97054-10|CAI42654.1| 4374|Homo sapiens upstream regulatory element
binding protein 1 (UREB1) protein.
Length = 4374
Score = 32.3 bits (70), Expect = 4.1
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -3
Query: 844 GXKNAKPLGLSFKLFNSIKRAFKFSFSCV---SYTVIASNVIPSDCSMLGMVSDLKLPH 677
G K P +L + R++ + + SYTV S +I DCS+L V D LPH
Sbjct: 2061 GSKPLMPTSTILRLLAELVRSYVGIATLIANYSYTVGQSELIKEDCSVLAFVLDHLLPH 2119
>Z94044-4|CAI42354.1| 4374|Homo sapiens upstream regulatory element
binding protein 1 (UREB1) protein.
Length = 4374
Score = 32.3 bits (70), Expect = 4.1
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -3
Query: 844 GXKNAKPLGLSFKLFNSIKRAFKFSFSCV---SYTVIASNVIPSDCSMLGMVSDLKLPH 677
G K P +L + R++ + + SYTV S +I DCS+L V D LPH
Sbjct: 2061 GSKPLMPTSTILRLLAELVRSYVGIATLIANYSYTVGQSELIKEDCSVLAFVLDHLLPH 2119
>DQ097177-1|AAY98258.1| 4374|Homo sapiens Mcl-1 ubiquitin ligase
protein.
Length = 4374
Score = 32.3 bits (70), Expect = 4.1
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -3
Query: 844 GXKNAKPLGLSFKLFNSIKRAFKFSFSCV---SYTVIASNVIPSDCSMLGMVSDLKLPH 677
G K P +L + R++ + + SYTV S +I DCS+L V D LPH
Sbjct: 2061 GSKPLMPTSTILRLLAELVRSYVGIATLIANYSYTVGQSELIKEDCSVLAFVLDHLLPH 2119
>AY929612-1|AAX24125.1| 4374|Homo sapiens LASU1 protein.
Length = 4374
Score = 32.3 bits (70), Expect = 4.1
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -3
Query: 844 GXKNAKPLGLSFKLFNSIKRAFKFSFSCV---SYTVIASNVIPSDCSMLGMVSDLKLPH 677
G K P +L + R++ + + SYTV S +I DCS+L V D LPH
Sbjct: 2061 GSKPLMPTSTILRLLAELVRSYVGIATLIANYSYTVGQSELIKEDCSVLAFVLDHLLPH 2119
>AY772009-1|AAV90838.1| 4374|Homo sapiens ARF-binding protein 1
protein.
Length = 4374
Score = 32.3 bits (70), Expect = 4.1
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -3
Query: 844 GXKNAKPLGLSFKLFNSIKRAFKFSFSCV---SYTVIASNVIPSDCSMLGMVSDLKLPH 677
G K P +L + R++ + + SYTV S +I DCS+L V D LPH
Sbjct: 2061 GSKPLMPTSTILRLLAELVRSYVGIATLIANYSYTVGQSELIKEDCSVLAFVLDHLLPH 2119
>AL592046-4|CAI39581.1| 3407|Homo sapiens upstream regulatory element
binding protein 1 (UREB1) protein.
Length = 3407
Score = 32.3 bits (70), Expect = 4.1
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -3
Query: 844 GXKNAKPLGLSFKLFNSIKRAFKFSFSCV---SYTVIASNVIPSDCSMLGMVSDLKLPH 677
G K P +L + R++ + + SYTV S +I DCS+L V D LPH
Sbjct: 1094 GSKPLMPTSTILRLLAELVRSYVGIATLIANYSYTVGQSELIKEDCSVLAFVLDHLLPH 1152
>AL592046-3|CAI39580.1| 4374|Homo sapiens upstream regulatory element
binding protein 1 (UREB1) protein.
Length = 4374
Score = 32.3 bits (70), Expect = 4.1
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -3
Query: 844 GXKNAKPLGLSFKLFNSIKRAFKFSFSCV---SYTVIASNVIPSDCSMLGMVSDLKLPH 677
G K P +L + R++ + + SYTV S +I DCS+L V D LPH
Sbjct: 2061 GSKPLMPTSTILRLLAELVRSYVGIATLIANYSYTVGQSELIKEDCSVLAFVLDHLLPH 2119
>AB071605-1|BAC06833.1| 3360|Homo sapiens HECT domain protein LASU1
protein.
Length = 3360
Score = 32.3 bits (70), Expect = 4.1
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -3
Query: 844 GXKNAKPLGLSFKLFNSIKRAFKFSFSCV---SYTVIASNVIPSDCSMLGMVSDLKLPH 677
G K P +L + R++ + + SYTV S +I DCS+L V D LPH
Sbjct: 1047 GSKPLMPTSTILRLLAELVRSYVGIATLIANYSYTVGQSELIKEDCSVLAFVLDHLLPH 1105
>AB046798-1|BAB13404.1| 1202|Homo sapiens KIAA1578 protein protein.
Length = 1202
Score = 32.3 bits (70), Expect = 4.1
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -3
Query: 844 GXKNAKPLGLSFKLFNSIKRAFKFSFSCV---SYTVIASNVIPSDCSMLGMVSDLKLPH 677
G K P +L + R++ + + SYTV S +I DCS+L V D LPH
Sbjct: 816 GSKPLMPTSTILRLLAELVRSYVGIATLIANYSYTVGQSELIKEDCSVLAFVLDHLLPH 874
>AB002310-1|BAA20771.2| 3192|Homo sapiens KIAA0312 protein.
Length = 3192
Score = 32.3 bits (70), Expect = 4.1
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = -3
Query: 844 GXKNAKPLGLSFKLFNSIKRAFKFSFSCV---SYTVIASNVIPSDCSMLGMVSDLKLPH 677
G K P +L + R++ + + SYTV S +I DCS+L V D LPH
Sbjct: 895 GSKPLMPTSTILRLLAELVRSYVGIATLIANYSYTVGQSELIKEDCSVLAFVLDHLLPH 953
>BC051751-1|AAH51751.1| 1147|Homo sapiens replication factor C
(activator 1) 1, 145kDa protein.
Length = 1147
Score = 31.5 bits (68), Expect = 7.2
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +2
Query: 419 SETTAKRLRWDDIDQPASCRSCVKVLGPNKICHLELERCVHSWRDELSKNKIVTRFGRAR 598
SE + L W D +P S ++ + G ++ C +L R + +W+ S++K +FG+
Sbjct: 577 SENKVENLLWVDKYKPTSLKTIIGQQG-DQSCANKLLRWLRNWQKSSSEDKKHAKFGKFS 635
Query: 599 G 601
G
Sbjct: 636 G 636
>AY600371-1|AAS94325.1| 1147|Homo sapiens replication factor C
(activator 1) 1, 145kDa protein.
Length = 1147
Score = 31.5 bits (68), Expect = 7.2
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +2
Query: 419 SETTAKRLRWDDIDQPASCRSCVKVLGPNKICHLELERCVHSWRDELSKNKIVTRFGRAR 598
SE + L W D +P S ++ + G ++ C +L R + +W+ S++K +FG+
Sbjct: 577 SENKVENLLWVDKYKPTSLKTIIGQQG-DQSCANKLLRWLRNWQKSSSEDKKHAKFGKFS 635
Query: 599 G 601
G
Sbjct: 636 G 636
>AK128044-1|BAC87247.1| 1135|Homo sapiens protein ( Homo sapiens
cDNA FLJ46164 fis, clone TESTI4002799, highly similar
to DNA-directed RNA polymerase I 135 kDa polypeptide (EC
2.7.7.6). ).
Length = 1135
Score = 31.1 bits (67), Expect = 9.5
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 612 NAENLSKIILK--DKKKTSTFLFPCGNLRSETIPNMLQSEGITLDA 743
N +NL +I D K +LF GNLRS+T +LQ G+ + A
Sbjct: 412 NTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVA 457
>AK022533-1|BAB14082.1| 1079|Homo sapiens protein ( Homo sapiens
cDNA FLJ12471 fis, clone NT2RM1000894, highly similar to
DNA-DIRECTED RNA POLYMERASE I 135 KD POLYPEPTIDE (EC
2.7.7.6). ).
Length = 1079
Score = 31.1 bits (67), Expect = 9.5
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 612 NAENLSKIILK--DKKKTSTFLFPCGNLRSETIPNMLQSEGITLDA 743
N +NL +I D K +LF GNLRS+T +LQ G+ + A
Sbjct: 356 NTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVA 401
>AC012442-2|AAX81999.1| 1135|Homo sapiens unknown protein.
Length = 1135
Score = 31.1 bits (67), Expect = 9.5
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 612 NAENLSKIILK--DKKKTSTFLFPCGNLRSETIPNMLQSEGITLDA 743
N +NL +I D K +LF GNLRS+T +LQ G+ + A
Sbjct: 412 NTDNLMRIFTMGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVA 457
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,510,729
Number of Sequences: 237096
Number of extensions: 2445588
Number of successful extensions: 4919
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 4328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4903
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 19402433436
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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