Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_A13
         (1344 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82059-2|CAB04876.3|  557|Caenorhabditis elegans Hypothetical pr...    31   2.5  
Z69360-6|CAA93282.1|  599|Caenorhabditis elegans Hypothetical pr...    29   9.9  

>Z82059-2|CAB04876.3|  557|Caenorhabditis elegans Hypothetical
           protein T27E9.5 protein.
          Length = 557

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +3

Query: 369 IFVEPLQF-IYINIEELSQKLLQNDYDGMILTSPRAVEAVSKCWDPTKFVIWNSKDVYTV 545
           I+V  LQF ++ + ++L + L   D +G+   S    E  S+CW+ +   IW+  D +  
Sbjct: 212 IYVIVLQFALFQSFDDLKKILTWLDSEGLGQKSLEEKEYASECWNLSPAKIWSHVDFFAF 271

Query: 546 GEMSSQKIK 572
              +   +K
Sbjct: 272 AHFTGWIMK 280


>Z69360-6|CAA93282.1|  599|Caenorhabditis elegans Hypothetical
           protein F25H8.6 protein.
          Length = 599

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
 Frame = +2

Query: 371 IRGATAVYLHKHRGVKSETTAKRLRWDD----IDQPASCRSCVK 490
           IRG T   L K  G  +  TAK  R+ D    I+Q A CR C K
Sbjct: 106 IRGTTEYPLRKRVGGSTVKTAKVWRYFDELPTIEQAAECRICRK 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,964,680
Number of Sequences: 27780
Number of extensions: 418870
Number of successful extensions: 963
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3777624114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)