Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_A13
         (1344 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   4.6  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    23   8.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   8.0  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
 Frame = -2

Query: 182 KFFSNRYTYNLYWCKVFEIYM-TSINIVKFNSXTFXAFKW 66
           K F+  Y Y++YW +   I      +I+  N  T     W
Sbjct: 255 KAFTYTYNYSMYWGQGHAILKGLKTSIILMNGTTLPQIMW 294


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 622 FSALPAVAPSASKPSNNFIF*ELISPTVYTSFEFQMTNFVG 500
           F   P V  S  +P + F++ E+ S   YT F  Q T+FVG
Sbjct: 358 FQTTPTV--SVEQP-HLFLYPEVSS--TYTGFGIQSTDFVG 393


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 894 WSLLPHLXXGNSTXH 938
           WSL+PH+    ST H
Sbjct: 101 WSLVPHMAWQLSTAH 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 258,128
Number of Sequences: 438
Number of extensions: 5683
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 46464381
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)