Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_A12
(1283 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p... 132 8e-32
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom... 31 0.45
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 28 2.4
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 27 5.6
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 27 5.6
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 27 5.6
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 7.4
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 26 9.8
>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 227
Score = 132 bits (320), Expect = 8e-32
Identities = 73/223 (32%), Positives = 119/223 (53%), Gaps = 1/223 (0%)
Frame = +1
Query: 139 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 318
LSD VQ ++ M++FI+Q F +EK ++V++Q I
Sbjct: 3 LSDEQVQAEMHKMVSFIKQEALEKAKEIHTLSEEEFQVEKAKIVREQCDAIDQTYDMKLK 62
Query: 319 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 498
I SN+LN++RL++L ++ + ++ K+L + + Y++ + LIVQ
Sbjct: 63 RASMAQKIAKSNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQ 122
Query: 499 ALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIKK-DVVLKVDTENFLSPDTCGGI 675
A+ L EP + RQ D +V++ + KA K+K D L +T++FL+ GG+
Sbjct: 123 AMELLGEPVGIVYSRQRDAEIVKAAIPKATEVLKSKNGSIDYELDAETDDFLNDSVLGGV 182
Query: 676 ELVAARGRIKISNTLESRLELIAQQLLPEIRNALFGRNPNRKF 804
LV G+I++ NTL +RLE++ ++ LPEIR LFG NPNRKF
Sbjct: 183 VLVGLGGKIRVDNTLRARLEIVKEEALPEIRRLLFGENPNRKF 225
>SPBC3B9.09 |vps36||RBZ zinc finger protein
Vps36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 467
Score = 30.7 bits (66), Expect = 0.45
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -2
Query: 667 HRCRATKSS-RCRLSTQHPS*SYSCSLFGLFRAGTPPEPCR 548
H R +SS + RLS +H S++C + G P PCR
Sbjct: 77 HTSRYFRSSPKIRLSLRHVEKSWACKICTFINVGDPINPCR 117
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 28.3 bits (60), Expect = 2.4
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +1
Query: 547 TDKALVESLLGKAQTDYKNKIKKDVVLKVDTENF--LSPDTCGGIELVAARGRIKISNTL 720
TD+ ++ + K + D + K+DV+ K+D S G +E +G +K S
Sbjct: 1861 TDQTAADNKVTKPRLDESSSSKQDVLNKIDESEIEQASSKKPGYVEKNKDKGHMKKSKKP 1920
Query: 721 ESRLELIA 744
+S+L L A
Sbjct: 1921 KSKLALAA 1928
>SPBC215.10 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 27.1 bits (57), Expect = 5.6
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 397 DHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEP 522
D N L+EA+KRLA +P D E+ +T + F+++ P
Sbjct: 181 DDDTNGLEEAKKRLAGIPSD-----EVALTQALPQTFEIIPP 217
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1052
Score = 27.1 bits (57), Expect = 5.6
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Frame = +1
Query: 415 LDEARKRLAEVPKDTK-LYSELLVTLIVQALFQL---MEPTVTIRVR-----QTDKALVE 567
++EA K KD K L +L T+ + + +E T+TI V DK E
Sbjct: 745 VEEAEKDYQPSEKDDKSLIGGILSTVEMTQSTDVNDEIENTLTIPVEVEHSDNIDKGSEE 804
Query: 568 SLLGKAQTDYKNKIKKDVVLKVDTENFLSPDTC 666
+ LGK D N + DV+ V E + D C
Sbjct: 805 NDLGKEAVDEANNNQNDVLESVVVEQSTTTDDC 837
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 27.1 bits (57), Expect = 5.6
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -3
Query: 528 DSGFHELEESLHNKCDQQL*VQF-GVLWHFSQALASFVEYITYMIFTHFQYLQTSLVQHV 352
+S F +EESL K + F + + S ++ +E I Y I THF S+++H+
Sbjct: 241 ESLFTSIEESLSLKFGWRTRRFFRSMFYERSWSVERVIECIRYSILTHFYGNALSIIEHL 300
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -3
Query: 138 RHGCCLFLTPLTRKTADIEPR 76
RHGCC+ L R DI+ R
Sbjct: 619 RHGCCILQRCLDRTNGDIQER 639
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 26.2 bits (55), Expect = 9.8
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -3
Query: 723 LQSVADLDTSPGCNQLDSTTGVGRQKVLGVDFQHNILLDLIL 598
LQ V+ + SP L VG+ +V+ DF LLDL L
Sbjct: 223 LQHVSHISISPNARYLALYESVGKVRVISSDFSKE-LLDLRL 263
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,832,251
Number of Sequences: 5004
Number of extensions: 72524
Number of successful extensions: 200
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 699486656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -