Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_A12
(1283 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 123 3e-28
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891... 111 2e-24
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670... 100 3e-21
09_02_0115 + 4413714-4414475 32 1.1
03_04_0095 + 17266595-17266741,17267235-17267807 30 4.5
11_05_0100 - 19056465-19056470,19057043-19057276,19058391-190585... 29 7.9
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122... 29 7.9
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 123 bits (297), Expect = 3e-28
Identities = 79/227 (34%), Positives = 121/227 (53%), Gaps = 11/227 (4%)
Frame = +1
Query: 139 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 318
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ KI
Sbjct: 1 MNDADVAKQIQQMVRFIRQEAEEKASEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
Query: 319 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 498
I+ S LN +R+KVL+ ++D V ++ ++A K+L V + Y LL L+VQ
Sbjct: 61 QVEVRKKIEYSMQLNASRIKVLQAQDDLVNSMKEDATKQLLRVSHNHHEYKNLLKELVVQ 120
Query: 499 ALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIK-KDVVLKVDTENFLSPDT---- 663
L +L EP V +R R+ D VES+L A+ +Y +K + + VD + +L P
Sbjct: 121 GLLRLKEPAVLLRCRKEDHHHVESVLHSAKNEYASKAEVHHPEILVDHDVYLPPSPSSHD 180
Query: 664 -----C-GGIELVAARGRIKISNTLESRLELIAQQLLPEIRNALFGR 786
C GG+ L + G+I NTL++RLE++ ++ LPEIR LFG+
Sbjct: 181 SHERFCSGGVVLASRDGKIVCENTLDARLEVVFRKKLPEIRKLLFGQ 227
>05_05_0231 +
23488588-23488689,23488775-23488875,23489012-23489168,
23489365-23489594,23489696-23489795,23489878-23489916
Length = 242
Score = 111 bits (266), Expect = 2e-24
Identities = 78/238 (32%), Positives = 122/238 (51%), Gaps = 22/238 (9%)
Frame = +1
Query: 139 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 318
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ +I
Sbjct: 1 MNDADVGKQIQQMVRFILQEAEEKASEISVAAEEEFNIEKLQLVESEKRRIRQDYERKAK 60
Query: 319 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIV- 495
I+ S LN AR+KVL+ ++ V + ++A K L V KD Y ++L LIV
Sbjct: 61 QVDVGRKIEYSTQLNAARIKVLRAQDGVVGEMKEDAGKSLLRVTKDATAYRKVLKGLIVQ 120
Query: 496 ----------QALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIKKDV-VLKVDTE 642
Q+L +L EP+V +R R+ D+ VES+L A+ +Y K K ++ + +D +
Sbjct: 121 RKDSEIIDQIQSLLRLREPSVVLRCREADRGHVESVLEAAKKEYAEKAKVNLPKILIDGK 180
Query: 643 NFLSPDT---------C-GGIELVAARGRIKISNTLESRLELIAQQLLPEIRNALFGR 786
+L P C GG+ + + G+I NTL++R+E+ +Q LPEIR LF +
Sbjct: 181 VYLPPPKTARDAHGPFCSGGVVIASQDGKIVCDNTLDARVEISFKQKLPEIRKKLFSQ 238
>01_01_0858 -
6699126-6699128,6699219-6699318,6700052-6700278,
6701032-6701188,6701422-6701522,6702147-6702251
Length = 230
Score = 100 bits (239), Expect = 3e-21
Identities = 69/229 (30%), Positives = 114/229 (49%), Gaps = 21/229 (9%)
Frame = +1
Query: 139 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 318
++D DV +Q+K M FI Q F IEK +LV+ ++ +I
Sbjct: 2 MNDGDVARQLKQMTDFIRQEAVEKAAEIEAAAAEEFQIEKLQLVEAEKKRIRLEFERNEK 61
Query: 319 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 498
I+ S LN +RL+VL+ ++D ++L+ A K L + +D +Y LL IVQ
Sbjct: 62 QGDIKKKIEYSKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIVQ 121
Query: 499 ----------ALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNK---------IKKDV 621
+L +L EP V +R R+ D+ LVES+L A+ +Y +K + ++V
Sbjct: 122 DKLTKKNPEQSLLRLKEPAVILRCRKEDRELVESVLESAKNEYADKANIYPPEIMVDRNV 181
Query: 622 VLKVDTENFLS--PDTCGGIELVAARGRIKISNTLESRLELIAQQLLPE 762
L ++ + P GG+ L + G+I NTL++RLE++ ++ LPE
Sbjct: 182 YLPPAPSHYEAHGPSCSGGVVLASRDGKIVCENTLDARLEVVFRKKLPE 230
>09_02_0115 + 4413714-4414475
Length = 253
Score = 31.9 bits (69), Expect = 1.1
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +3
Query: 468 LRAAGHTYCAGSLPAHGTHCHHPRPSNRQGSGG 566
LR H+ + SLP H HHPRP +GS G
Sbjct: 20 LRLFSHSSASASLPLLLGHFHHPRPVPPRGSPG 52
>03_04_0095 + 17266595-17266741,17267235-17267807
Length = 239
Score = 29.9 bits (64), Expect = 4.5
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
Frame = +3
Query: 492 CAGSLPAHGTHCHHPRPSNRQGSGGVPARKSPNRLQE*DQEGCCVE-----SRHRELFVA 656
C G + HG H R ++ GV P + + + C + R RE
Sbjct: 150 CVG-VRLHGRRHPHRREAHGGSGSGVFIGGGPREVAQGETSSCARQHLLDGQRRRE--PK 206
Query: 657 RHLWWNRAG-CSQG--TYQDQQHSGVSLGADR 743
RHLWW R G +G + +Q S G DR
Sbjct: 207 RHLWWQRGGEVRRGGSGARGRQESAAQQGRDR 238
>11_05_0100 -
19056465-19056470,19057043-19057276,19058391-19058546,
19059639-19059763,19059912-19059983,19060080-19060184,
19060691-19060745,19061576-19061656,19062806-19062869,
19064715-19064782,19064947-19065033,19066121-19066285,
19066310-19066429,19066485-19066607,19066738-19067019,
19067936-19068075,19068234-19068335,19068802-19068874,
19069061-19069171
Length = 722
Score = 29.1 bits (62), Expect = 7.9
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -1
Query: 824 SPLN*SVNLRLGLRPKRALRISGSSCWAISSKRDSRVLLILIRPLAATSSI--PPQVSGD 651
S +N S + G+ + I S C A+ SK D +LIL P+A + ++ P ++ G
Sbjct: 321 SAVNGSSHEGNGMNDNSKILIDNSCCLALYSKLDEDQVLILQSPVALSKAVKNPVELDGL 380
Query: 650 KK 645
+K
Sbjct: 381 RK 382
>10_08_0762 -
20410681-20411834,20411999-20412098,20412200-20412298,
20412563-20414133,20415080-20415128
Length = 990
Score = 29.1 bits (62), Expect = 7.9
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +1
Query: 367 ARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQA 501
+RL++LK R+D++ N LD+A K+ E D + E V +QA
Sbjct: 826 SRLRILKCRDDNI-NSLDDAIKQHVEACTDQPNWDEDGVVAKIQA 869
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,774,874
Number of Sequences: 37544
Number of extensions: 525412
Number of successful extensions: 1469
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1462
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3992400636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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