Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_A08
         (1262 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces...    48   3e-06
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    29   1.0  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    29   1.4  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   4.1  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   4.1  

>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 31/96 (32%), Positives = 44/96 (45%)
 Frame = +1

Query: 679 LMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQATSSRCILCCAFIIFGFYLGV 858
           L I +   CL  V V FY + R L   F ++ S++LL+Q T       C  ++ GF  GV
Sbjct: 163 LGIVSKTYCLAFVPVSFYQISRGLLLPFTILLSFVLLKQKTRLFPFGGCLLVMLGFGFGV 222

Query: 859 DQENLLGSFSLIGTIYGVVGSLMLSWYSIXTKKVYH 966
             E+ +     IG I GV  S   +  S+  K   H
Sbjct: 223 RFESHVAP---IGIILGVWSSFTTAIESVAVKHYVH 255


>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 3/143 (2%)
 Frame = +1

Query: 475 VNKTLFSSQTVALEAPLFITWFQCIISFSICFTLSQNGGVPGIFSFPKGTPWSMDVMKKV 654
           +NK +FS   +  + PLF++  Q ++     F        P      K     ++   + 
Sbjct: 70  MNKWIFSESKMDFQFPLFLSSCQMLVQMG--FAKLTILAFPRYQPNKKDNFSWLEYFYRA 127

Query: 655 IPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQATSSRCILCCAFI 834
              A++  L I  +N  L+ + + FY + RS   +F   FS ++ R       +LC   +
Sbjct: 128 GICALVTGLDIGLSNASLETITLSFYTMCRSSILIFVFFFS-VIFRIEMFDWILLCITLV 186

Query: 835 I-FGFYLGVDQEN--LLGSFSLI 894
           I  G  L V  E   +L  F L+
Sbjct: 187 ISAGVVLMVATETQFVLSGFLLV 209


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 661  LAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVV 771
            L+I YT+     N+C+K  G+ FYY   S   +F+VV
Sbjct: 1307 LSICYTI-----NICVKVYGLSFYYFFHSFWNMFDVV 1338


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 787  LRQATSSRCILCCAFIIFGFYLGVDQENLLGSFSLIGTIYGVVGSL 924
            L       C+ CCA      Y     ++LLG  S + T+YGV  +L
Sbjct: 1555 LASEMDGECV-CCASFANCVYCSRCSDSLLGEESTVSTMYGVKPTL 1599


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 787  LRQATSSRCILCCAFIIFGFYLGVDQENLLGSFSLIGTIYGVVGSL 924
            L       C+ CCA      Y     ++LLG  S + T+YGV  +L
Sbjct: 1555 LASEMDGECV-CCASFANCVYCSRCSDSLLGEESTVSTMYGVKPTL 1599


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,403,585
Number of Sequences: 5004
Number of extensions: 91672
Number of successful extensions: 182
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 685576410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)