Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_A08
(1262 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0687 - 6057023-6058051 43 6e-04
05_03_0110 + 8500204-8500460,8502544-8502612,8502725-8502790,850... 43 6e-04
02_04_0601 + 24255264-24255420,24256228-24256234,24256803-242568... 39 0.007
03_02_0156 - 5981080-5982189,5982227-5982247,5983308-5983337 34 0.21
02_01_0410 + 2996779-2997888 33 0.36
06_01_0615 - 4454099-4454266,4454366-4454509,4454632-4454790,445... 32 1.1
03_06_0763 + 36081546-36081669,36081755-36082170,36082280-360823... 31 1.9
06_02_0039 - 10873398-10873680,10874505-10874671,10874807-108749... 30 4.4
05_04_0083 + 17780665-17780764,17781070-17781124,17781193-177813... 29 5.9
01_06_1585 - 38448403-38448512,38448836-38448916,38449388-384494... 29 5.9
07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659 29 7.7
03_05_0783 - 27662178-27662237,27662659-27662700,27662791-276628... 29 7.7
>08_01_0687 - 6057023-6058051
Length = 342
Score = 42.7 bits (96), Expect = 6e-04
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 6/140 (4%)
Frame = +1
Query: 625 PWSMDVMKKVIPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQATS 804
P+++ KK P A+++ L I TN LKH V + V RSLT + + +Q
Sbjct: 64 PFNLQTAKKFAPAALVFYLAIFTNTHLLKHANVDTFIVFRSLTPLLVAIADTAFRKQPCP 123
Query: 805 SRCILCCAFIIFGFYLGVDQENLLGSFSLIGTIYGVVGSLMLSWYSIXTKKVY--HMLXR 978
S+ I G +G + FSL T Y + ++ +I T+ VY HM+ +
Sbjct: 124 SKLTFVSLVTILGGAVGYVMTD--SGFSL--TAYSWAVAYLV---TITTEMVYIKHMVTK 176
Query: 979 SMVXSY----YNNAYXIILS 1026
+ ++ YNN +I++
Sbjct: 177 LGLNTWGFVLYNNLLSLIIA 196
>05_03_0110 +
8500204-8500460,8502544-8502612,8502725-8502790,
8502885-8502963,8504270-8504390,8504486-8504581,
8505403-8505515,8505612-8505689,8507777-8507893,
8508194-8508293,8508463-8508563,8509093-8509110
Length = 404
Score = 42.7 bits (96), Expect = 6e-04
Identities = 29/131 (22%), Positives = 58/131 (44%)
Frame = +1
Query: 604 FSFPKGTPWSMDVMKKVIPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWI 783
F PK P + V+K + P+A+ + + T+ + V V F + ++L FN S
Sbjct: 151 FGLPKRAPINSTVLKLLFPVAVCHAIGHVTSTVSFAAVAVSFAHTIKALEPFFNAAASQF 210
Query: 784 LLRQATSSRCILCCAFIIFGFYLGVDQENLLGSFSLIGTIYGVVGSLMLSWYSIXTKKVY 963
+L Q L A ++ G + E SF+ G + ++ ++ + S+ +KK
Sbjct: 211 ILGQQVPLTLWLSLAPVVIGVSMASLTEL---SFNWTGFVNAMISNISFTLRSVYSKKAM 267
Query: 964 HMLXRSMVXSY 996
+ + + +Y
Sbjct: 268 TDMDSTNLYAY 278
>02_04_0601 +
24255264-24255420,24256228-24256234,24256803-24256851,
24256954-24257087,24257464-24257594,24257679-24257723,
24257814-24257911,24258340-24258396,24258865-24258939
Length = 250
Score = 39.1 bits (87), Expect = 0.007
Identities = 19/71 (26%), Positives = 35/71 (49%)
Frame = +1
Query: 640 VMKKVIPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQATSSRCIL 819
++ + PL++ Y L + + ++ V VP Y R T VF + + L +Q + I
Sbjct: 56 ILLRTTPLSLAYLLYMLASMESVRGVNVPMYTTLRRTTVVFTMTMEYFLAKQKHTPPIIG 115
Query: 820 CCAFIIFGFYL 852
A I+FG ++
Sbjct: 116 SVALIVFGAFI 126
>03_02_0156 - 5981080-5982189,5982227-5982247,5983308-5983337
Length = 386
Score = 34.3 bits (75), Expect = 0.21
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +1
Query: 631 SMDVMKKVIPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQA-TSS 807
++ M K +P A+M+ + I TN+ L H V + V RS +F + + L Q S
Sbjct: 114 NLRTMWKFLPAAVMFYISIFTNSELLLHANVDTFIVFRSAVPIFVAIGETLYLHQPWPSL 173
Query: 808 RCILCCAFIIFGFYLGVDQEN 870
+ L + I+ G + V +N
Sbjct: 174 KTWLSLSTILGGSVIYVFTDN 194
>02_01_0410 + 2996779-2997888
Length = 369
Score = 33.5 bits (73), Expect = 0.36
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +1
Query: 631 SMDVMKKVIPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQA-TSS 807
++ M K +P A+M+ + I TN+ L H V + V RS +F + L Q S
Sbjct: 97 NLRTMWKFLPAAVMFYISIFTNSELLLHANVDTFIVFRSAVPIFVAIGETFYLHQPWPSL 156
Query: 808 RCILCCAFIIFGFYLGVDQEN 870
+ L + I+ G + V +N
Sbjct: 157 KTWLSLSTILGGSVIYVFTDN 177
>06_01_0615 -
4454099-4454266,4454366-4454509,4454632-4454790,
4454871-4454981,4455511-4455756,4455871-4455976,
4457180-4457217
Length = 323
Score = 31.9 bits (69), Expect = 1.1
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +1
Query: 601 IFSFPKGTPWSMDVMKKVIPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLT 753
I K +SM +K++PL+I Y +A LK V +P Y + LT
Sbjct: 61 ILGVSKRKDFSMATGRKLLPLSIFYNANVAFALASLKGVNIPMYIAIKRLT 111
>03_06_0763 +
36081546-36081669,36081755-36082170,36082280-36082339,
36082466-36083101
Length = 411
Score = 31.1 bits (67), Expect = 1.9
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = -2
Query: 814 YIWTMLPVLIISS*IQH*RLW---SEIFLHNRTVLLHASNTNYLWLSSKYTLLPVESPFS 644
++ T P+ I S+ + + L S LH V L A T++ WL L V PF
Sbjct: 131 FLGTCAPICIYSTLLYYYYLHLPNSNHLLHYLQVRLEAL-TDFCWLCENPQKLVV--PFD 187
Query: 643 *RPYSKVFLLERKIYQ 596
R Y V+ LER+IY+
Sbjct: 188 MRGYQGVYNLERRIYE 203
>06_02_0039 -
10873398-10873680,10874505-10874671,10874807-10874900,
10874988-10875196,10875283-10875434,10876673-10876763
Length = 331
Score = 29.9 bits (64), Expect = 4.4
Identities = 18/80 (22%), Positives = 31/80 (38%)
Frame = +1
Query: 604 FSFPKGTPWSMDVMKKVIPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWI 783
+ P P + L + + N+ LKH V FY + + T V +I
Sbjct: 113 YLLPIAPPSKSTPFSSLFALGAVMSFSTGLANISLKHNSVGFYQMAKIAVTPTIVAAEFI 172
Query: 784 LLRQATSSRCILCCAFIIFG 843
L ++ S R ++ A + G
Sbjct: 173 LFKKKVSLRKVITLAVVSCG 192
>05_04_0083 +
17780665-17780764,17781070-17781124,17781193-17781313,
17781361-17781429,17782047-17782274,17782477-17782666,
17783303-17783694,17784380-17784427,17784816-17785400
Length = 595
Score = 29.5 bits (63), Expect = 5.9
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 522 SIHNLVPVYNFILNLFYIESKWWSSWYIFLSKRNTLEYGRH 644
S H L P Y F+ +LF ++ WW + + E+G H
Sbjct: 15 SPHLLFPFYFFLPSLFCLQGPWWLTGHDLEGSGCVWEWGLH 55
>01_06_1585 -
38448403-38448512,38448836-38448916,38449388-38449475,
38449571-38449666,38449823-38449879,38449960-38450466,
38450701-38451393,38451612-38451683
Length = 567
Score = 29.5 bits (63), Expect = 5.9
Identities = 15/63 (23%), Positives = 27/63 (42%)
Frame = +3
Query: 507 GS*GASIHNLVPVYNFILNLFYIESKWWSSWYIFLSKRNTLEYGRHEKGDSTGNNVYFDD 686
GS G S+ + + F +ES W W +F + E+G+ G YF++
Sbjct: 22 GSQGVSVSQKIDHGSISFGRFELESLSWEKWSVFSDDKRHEEFGKF-NGLVAQKKAYFEE 80
Query: 687 SHK 695
++
Sbjct: 81 YYR 83
>07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659
Length = 175
Score = 29.1 bits (62), Expect = 7.7
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 808 WTMLPVLIISS*IQH*RLWSEI-FLHNRTVLLHASNTNY 695
W LP ++S+ + L I FLH TV+ H + TNY
Sbjct: 14 WRFLPRRLVSTVMPSVTLLPRILFLHPTTVMFHMNRTNY 52
>03_05_0783 -
27662178-27662237,27662659-27662700,27662791-27662892,
27662991-27663147,27663230-27663307,27663391-27663446,
27663557-27663634,27663736-27663867,27663943-27664078,
27664252-27664403,27665317-27665391,27665476-27665535,
27665865-27665944,27666392-27666462,27666549-27666689,
27667467-27667555,27668657-27668731,27669303-27669401,
27669526-27669572,27669654-27669875,27671485-27671557,
27671650-27671823
Length = 732
Score = 29.1 bits (62), Expect = 7.7
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +1
Query: 730 YYVGRSLTTVFNV--VFSWILLRQATSSRCILCCAFIIFGFYLGVDQENLLGSFSLIGTI 903
Y+VG + VFN+ VFS + + + I G+ GVD +L +L+G I
Sbjct: 114 YFVGFFVYIVFNLALVFSSVYIVTNFAPAAAGSGIPEIKGYLNGVDTHGILLFRTLVGKI 173
Query: 904 YGVVGSL 924
+G +GS+
Sbjct: 174 FGSIGSV 180
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,150,989
Number of Sequences: 37544
Number of extensions: 493827
Number of successful extensions: 930
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3910923072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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