Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_A08
(1262 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70750-12|CAA94748.2| 363|Caenorhabditis elegans Hypothetical p... 180 1e-45
AF323969-1|AAK50396.1| 363|Caenorhabditis elegans GDP-fucose tr... 180 1e-45
Z68011-5|CAB60293.1| 332|Caenorhabditis elegans Hypothetical pr... 111 1e-24
Z68004-10|CAB60291.1| 332|Caenorhabditis elegans Hypothetical p... 111 1e-24
AF003130-7|AAO38638.1| 247|Caenorhabditis elegans Dehydrogenase... 35 0.11
AF106575-17|AAD56300.2| 333|Caenorhabditis elegans Serpentine r... 30 3.0
AF025454-8|AAK68370.1| 334|Caenorhabditis elegans Serpentine re... 30 3.0
AL023856-3|CAA19562.2| 335|Caenorhabditis elegans Hypothetical ... 30 4.0
AF100672-1|AAC68997.2| 334|Caenorhabditis elegans Hypothetical ... 29 5.3
Z70271-7|CAJ80829.1| 559|Caenorhabditis elegans Hypothetical pr... 29 9.2
Z70271-6|CAA94232.1| 562|Caenorhabditis elegans Hypothetical pr... 29 9.2
>Z70750-12|CAA94748.2| 363|Caenorhabditis elegans Hypothetical
protein C50F4.14 protein.
Length = 363
Score = 180 bits (439), Expect = 1e-45
Identities = 89/185 (48%), Positives = 126/185 (68%), Gaps = 1/185 (0%)
Frame = +1
Query: 472 FVNKTLFSSQTVALEAPLFITWFQCIISFSICFTLSQNGGVPGIFSFPKGTPWSMDVMKK 651
F+NK L SS V L+APLFITW+QC+++ +C LS+ G+F FP P + ++
Sbjct: 46 FLNKYLLSS--VQLDAPLFITWYQCLVTVFLCLFLSKTSKAYGLFKFPS-MPIDAKISRE 102
Query: 652 VIPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQATSSRCILCCAF 831
V+PL++++ MI+ NNLCLK+VGV FYYVGRSLTTVFNVV ++++L Q TS + I CCA
Sbjct: 103 VLPLSVVFVAMISFNNLCLKYVGVSFYYVGRSLTTVFNVVCTYLILGQKTSGQAIGCCAL 162
Query: 832 IIFGFYLGVDQENLLGSFSLIGTIYGVVGSLMLSWYSIXTKKVYHMLXRSM-VXSYYNNA 1008
IIFGF LGVDQE + G+ S G I+GV+ SL ++ +I T+KV + + + YNN
Sbjct: 163 IIFGFLLGVDQEGVTGTLSYTGVIFGVLASLSVALNAIYTRKVLSSVGDCLWRLTMYNNL 222
Query: 1009 YXIIL 1023
++L
Sbjct: 223 NALVL 227
>AF323969-1|AAK50396.1| 363|Caenorhabditis elegans GDP-fucose
transporter protein.
Length = 363
Score = 180 bits (439), Expect = 1e-45
Identities = 89/185 (48%), Positives = 126/185 (68%), Gaps = 1/185 (0%)
Frame = +1
Query: 472 FVNKTLFSSQTVALEAPLFITWFQCIISFSICFTLSQNGGVPGIFSFPKGTPWSMDVMKK 651
F+NK L SS V L+APLFITW+QC+++ +C LS+ G+F FP P + ++
Sbjct: 46 FLNKYLLSS--VQLDAPLFITWYQCLVTVFLCLFLSKTSKAYGLFKFPS-MPIDAKISRE 102
Query: 652 VIPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQATSSRCILCCAF 831
V+PL++++ MI+ NNLCLK+VGV FYYVGRSLTTVFNVV ++++L Q TS + I CCA
Sbjct: 103 VLPLSVVFVAMISFNNLCLKYVGVSFYYVGRSLTTVFNVVCTYLILGQKTSGQAIGCCAL 162
Query: 832 IIFGFYLGVDQENLLGSFSLIGTIYGVVGSLMLSWYSIXTKKVYHMLXRSM-VXSYYNNA 1008
IIFGF LGVDQE + G+ S G I+GV+ SL ++ +I T+KV + + + YNN
Sbjct: 163 IIFGFLLGVDQEGVTGTLSYTGVIFGVLASLSVALNAIYTRKVLSSVGDCLWRLTMYNNL 222
Query: 1009 YXIIL 1023
++L
Sbjct: 223 NALVL 227
>Z68011-5|CAB60293.1| 332|Caenorhabditis elegans Hypothetical
protein T21B6.5 protein.
Length = 332
Score = 111 bits (267), Expect = 1e-24
Identities = 57/161 (35%), Positives = 89/161 (55%)
Frame = +1
Query: 472 FVNKTLFSSQTVALEAPLFITWFQCIISFSICFTLSQNGGVPGIFSFPKGTPWSMDVMKK 651
F+NK L S L+ PLFIT QC+++ IC L + +
Sbjct: 43 FINKHLLSGIGAELDIPLFITCCQCLVTIGICLVLRWGSFKTKYLKTFSKLDINFETCID 102
Query: 652 VIPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQATSSRCILCCAF 831
V+PL+I++ MI+ NNLCL++VGV FYYVGRS+TTVF V+ +++ ++ + C
Sbjct: 103 VLPLSIVFVAMISFNNLCLRNVGVAFYYVGRSITTVFTVILTYVFFGDNSTKGVNVSCLV 162
Query: 832 IIFGFYLGVDQENLLGSFSLIGTIYGVVGSLMLSWYSIXTK 954
I+ GF +G DQE+ + G +YG+ SL ++ ++ TK
Sbjct: 163 ILIGFGIGSDQES-QDPLTTSGVLYGMFASLAVALNALYTK 202
>Z68004-10|CAB60291.1| 332|Caenorhabditis elegans Hypothetical
protein T21B6.5 protein.
Length = 332
Score = 111 bits (267), Expect = 1e-24
Identities = 57/161 (35%), Positives = 89/161 (55%)
Frame = +1
Query: 472 FVNKTLFSSQTVALEAPLFITWFQCIISFSICFTLSQNGGVPGIFSFPKGTPWSMDVMKK 651
F+NK L S L+ PLFIT QC+++ IC L + +
Sbjct: 43 FINKHLLSGIGAELDIPLFITCCQCLVTIGICLVLRWGSFKTKYLKTFSKLDINFETCID 102
Query: 652 VIPLAIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQATSSRCILCCAF 831
V+PL+I++ MI+ NNLCL++VGV FYYVGRS+TTVF V+ +++ ++ + C
Sbjct: 103 VLPLSIVFVAMISFNNLCLRNVGVAFYYVGRSITTVFTVILTYVFFGDNSTKGVNVSCLV 162
Query: 832 IIFGFYLGVDQENLLGSFSLIGTIYGVVGSLMLSWYSIXTK 954
I+ GF +G DQE+ + G +YG+ SL ++ ++ TK
Sbjct: 163 ILIGFGIGSDQES-QDPLTTSGVLYGMFASLAVALNALYTK 202
>AF003130-7|AAO38638.1| 247|Caenorhabditis elegans Dehydrogenases,
short chain protein2, isoform b protein.
Length = 247
Score = 35.1 bits (77), Expect = 0.11
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +1
Query: 784 LLRQATSSRCILCCAFIIFGFYLGVDQENLLGSFSLIGTIYGVVGSLMLSWYSI 945
L + SR + C F++F F+L + Q+ LG + +I VG L YS+
Sbjct: 134 LFQHHMKSRALNACTFLVFCFFLTIQQQTYLGRVVTVASICARVGLPGLGPYSV 187
>AF106575-17|AAD56300.2| 333|Caenorhabditis elegans Serpentine
receptor, class h protein5 protein.
Length = 333
Score = 30.3 bits (65), Expect = 3.0
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 6/124 (4%)
Frame = +1
Query: 502 TVALEAPLFITWFQCIISFS-ICFTLSQNGGVPGIFS-----FPKGTPWSMDVMKKVIPL 663
+ ++ P++I F +I S + F+ +N V +FS GT W + ++ IP+
Sbjct: 21 STSISVPIYIVAFWILIFKSPVHFSKYRNYLVAHVFSGLLLELHMGTIWKVTIILP-IPI 79
Query: 664 AIMYTLMIATNNLCLKHVGVPFYYVGRSLTTVFNVVFSWILLRQATSSRCILCCAFIIFG 843
+ + + + + V F Y G S +F +++ Q +SR FG
Sbjct: 80 MCSNSPLAEYAPILFQLLFVCFVYTGISAQQLFLYRMEAVVIFQNENSRLKKLVTITKFG 139
Query: 844 FYLG 855
FY+G
Sbjct: 140 FYIG 143
>AF025454-8|AAK68370.1| 334|Caenorhabditis elegans Serpentine
receptor, class i protein62 protein.
Length = 334
Score = 30.3 bits (65), Expect = 3.0
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 778 WILLRQ-ATSSRCILCCAFIIFGFYLGVDQENLLGSFSLI 894
W LL Q ATSS C++ F +F +G+D ++ F L+
Sbjct: 240 WSLLAQFATSSVCVVPPIFFVFVVLIGIDGAQVIVEFLLV 279
>AL023856-3|CAA19562.2| 335|Caenorhabditis elegans Hypothetical
protein Y94A7B.6 protein.
Length = 335
Score = 29.9 bits (64), Expect = 4.0
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Frame = +1
Query: 490 FSSQTVALEAPLFITWFQCIISFSICFTLSQNGGVPGIFSFPKGTPWSMDVMK--KVIPL 663
F S ++ L L F C +F+ F+L G+ G+ P WS+ ++ K++P+
Sbjct: 54 FWSASLDLSISLLAQPFMCTPAFA-GFSL----GIWGLIGVPT-VVWSLGIIAVFKMVPI 107
Query: 664 AIM------YTLMIATNNLCLKHVGVPFYYVGRSLTTVF 762
+I+ YT++ TNN +++ PF + +L +
Sbjct: 108 SIISMFENRYTVLFVTNNGAWRYLRYPFLILNYTLVLAY 146
>AF100672-1|AAC68997.2| 334|Caenorhabditis elegans Hypothetical
protein W05E7.2 protein.
Length = 334
Score = 29.5 bits (63), Expect = 5.3
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 811 CILCCAFIIFGFYLGVDQEN 870
CILCC ++F FY+ V++ N
Sbjct: 31 CILCCYIVLFPFYVYVNKVN 50
>Z70271-7|CAJ80829.1| 559|Caenorhabditis elegans Hypothetical
protein W08D2.3b protein.
Length = 559
Score = 28.7 bits (61), Expect = 9.2
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 748 LTTVFNVVFSWILLRQATSSRCILCCAFIIFGFYLGVDQENLLGSFSLI 894
+T + + ++ L A +LC FI+FG LG+ ++ +F +I
Sbjct: 100 ITCLILISACFLALPHAAHIILLLCIVFIVFGTVLGISLSAVISNFVVI 148
>Z70271-6|CAA94232.1| 562|Caenorhabditis elegans Hypothetical
protein W08D2.3a protein.
Length = 562
Score = 28.7 bits (61), Expect = 9.2
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +1
Query: 748 LTTVFNVVFSWILLRQATSSRCILCCAFIIFGFYLGVDQENLLGSFSLI 894
+T + + ++ L A +LC FI+FG LG+ ++ +F +I
Sbjct: 103 ITCLILISACFLALPHAAHIILLLCIVFIVFGTVLGISLSAVISNFVVI 151
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,936,884
Number of Sequences: 27780
Number of extensions: 501330
Number of successful extensions: 1201
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3516412346
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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