Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP18_F_A04
         (1297 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49130-6|CAA88971.1|  387|Caenorhabditis elegans Hypothetical pr...    58   1e-08
Z29560-9|CAA82661.3|  148|Caenorhabditis elegans Hypothetical pr...    29   7.2  

>Z49130-6|CAA88971.1|  387|Caenorhabditis elegans Hypothetical
           protein T06D8.8 protein.
          Length = 387

 Score = 58.0 bits (134), Expect = 1e-08
 Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
 Frame = +2

Query: 545 QIHGRFYKXASEYYRVRGPXGRXXRXXLRYVGCADGGEALPATERADI-AFRLXLSGVLA 721
           ++H  FY+ +S Y R  G      R  LRY+G  D       TE+  + A  L  + +L 
Sbjct: 159 EVHAPFYRVSSLYLREVGDFAGYYREALRYLGVEDANNL--TTEQKQVHAVLLGFAALLG 216

Query: 722 PDVYDXGELXAHPILHSLXGTPNEW 796
            +V++ GEL AHPIL SL GT   W
Sbjct: 217 ENVHNFGELLAHPILKSLEGTRERW 241



 Score = 33.1 bits (72), Expect = 0.44
 Identities = 15/53 (28%), Positives = 20/53 (37%)
 Frame = +2

Query: 152 DWAXXXXXXXXXXWHQLTLKXQEFVKNPALQRGDNLIXXYXXFXXTXESXINP 310
           DW           WHQLT+  +  VK P      ++   Y  F    E  +NP
Sbjct: 21  DWKNLKELWEKKLWHQLTVLTRSLVKKPQFVASTDMHEFYRLFVAEWELRVNP 73


>Z29560-9|CAA82661.3|  148|Caenorhabditis elegans Hypothetical
           protein K03H1.9 protein.
          Length = 148

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 550 NLESHHQHXRVYFLNXQLXFRLH 482
           N + HHQH R + L  +L +RLH
Sbjct: 3   NRQLHHQHHRYHLLLLRLHYRLH 25


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,505,747
Number of Sequences: 27780
Number of extensions: 257325
Number of successful extensions: 440
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3611117266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)