Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_A02
(1220 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa... 151 2e-37
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac... 46 1e-05
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 30 0.75
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 27 4.0
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 27 4.0
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 27 4.0
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 27 4.0
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 27 4.0
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 27 4.0
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun... 27 4.0
SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 7.0
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa... 27 7.0
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 26 9.2
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 26 9.2
>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 151 bits (366), Expect = 2e-37
Identities = 72/155 (46%), Positives = 100/155 (64%), Gaps = 2/155 (1%)
Frame = +2
Query: 176 SVGRNSESESGDPEATEHDP--HFEPIVSLPLVDIQTHEEDEEELAKIRARLYRYDTGDH 349
S + GD +A P HFEPIV L V+ +T+EE+E K+RA+L+R+D
Sbjct: 52 STNDEKKPAEGDEDAEPASPEVHFEPIVKLSAVETKTNEEEETVEFKMRAKLFRFDKAAS 111
Query: 350 EWKERGTGDVKLLRHKLNNTVRVVMRRDKTLKVCANHFITPDIRMNVHCGSDRAFNWSVF 529
EWKERGTGD +LL+HK R+VMRRDKTLKVCANH + P++++ + GSDR++ W+V
Sbjct: 112 EWKERGTGDARLLKHKETGKTRLVMRRDKTLKVCANHLLMPEMKLTPNVGSDRSWVWTVA 171
Query: 530 ADYADETCKQELLAIKFGNPQNAELWKAKFAEAQE 634
AD ++ E AI+F N +NA L+K F + QE
Sbjct: 172 ADVSEGEPTAETFAIRFANSENANLFKENFEKYQE 206
>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
Hba1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 45.6 bits (103), Expect = 1e-05
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Frame = +2
Query: 107 DNL**NSSATYLQIYRMSSPCEESVGRNSESESGDPEATEHDPHFEPIVSLPLVDIQTHE 286
D L N+SA + + S+ E+ E++ G ++T+ H L +I T E
Sbjct: 220 DELLANTSAKAFENQKGSAG--ETKSEPKEADKGSGDSTKSTMH-----QLSDSEIITGE 272
Query: 287 EDEEELAKIRARLYRYDTGDHEWKERGTG--DVKLLRHKLNNTVRVVMRRDKTLKVCAN 457
E+EE + +RARLY WKERG G V + + + + + R++MR D +V N
Sbjct: 273 EEEESIFSVRARLYVVADEKKTWKERGQGILKVNVPKQRGSGSGRLLMRNDAVHRVIMN 331
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 29.9 bits (64), Expect = 0.75
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Frame = +2
Query: 455 NHFITPDIRMNVHCGS--DRAFNWSVFADYADETCKQELLAIKFGNPQNAELWKAKFAEA 628
+HF PD++MN H S DR + + + + + P ++ ++F A
Sbjct: 546 SHFEVPDLKMNHHDSSFFDRHIDQTAMPGQNQHGTVKNMETMHHFYP---DVHNSEFPAA 602
Query: 629 QEIVRTKCSLYCQDQSSDDE 688
V+++ Y Q Q++DDE
Sbjct: 603 PNPVKSQVPYYYQSQAADDE 622
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 27.5 bits (58), Expect = 4.0
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -3
Query: 435 LSLLITTRTVLFSL*RRSLTSPVPLSFHS 349
LSL RT+LFSL L P P FHS
Sbjct: 121 LSLFAFCRTILFSLLTSFLLVPPPQFFHS 149
>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 27.5 bits (58), Expect = 4.0
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +2
Query: 668 DQSSDDESSITRSEDTDTPEPKSTEKS 748
D SSD ES+ + SE TD E K+ EKS
Sbjct: 190 DSSSDSESNTSFSE-TDVEEEKAEEKS 215
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 27.5 bits (58), Expect = 4.0
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 241 EVWIMFRSFWISTFALTVSTHAFFTWRRHSVNLQVCS 131
EV+ +R F ISTF L + FT R ++ VC+
Sbjct: 88 EVYKEYRDFMISTFRLNSKVYLTFTACRRNLAGDVCA 124
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 27.5 bits (58), Expect = 4.0
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 11/57 (19%)
Frame = -2
Query: 301 LLFIFFVSLNIYQGQR------YDGFEVWIMFRS-FWISTFALTVSTHAF----FTW 164
LLF F +IY G R + VWI FWIST A+ +S F F+W
Sbjct: 1476 LLFSRFAGPSIYLGSRTLLMLLFGTMTVWIPHLIYFWISTLAMCISPFIFNPHQFSW 1532
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 27.5 bits (58), Expect = 4.0
Identities = 17/73 (23%), Positives = 35/73 (47%)
Frame = +2
Query: 533 DYADETCKQELLAIKFGNPQNAELWKAKFAEAQEIVRTKCSLYCQDQSSDDESSITRSED 712
D DE+ K+ G+ +N E W+ A A++ + + + +S+ ++ T +
Sbjct: 1159 DLDDESLKKVKADSDSGSTKNEENWEVALAAAEDEEDVQAAQVARKESALEQ---TEFSE 1215
Query: 713 TDTPEPKSTEKSS 751
T TP+ T+ S+
Sbjct: 1216 TSTPQAMLTKDST 1228
Score = 26.2 bits (55), Expect = 9.2
Identities = 21/85 (24%), Positives = 45/85 (52%)
Frame = +2
Query: 500 SDRAFNWSVFADYADETCKQELLAIKFGNPQNAELWKAKFAEAQEIVRTKCSLYCQDQSS 679
S+ A +W+ +D+ + L +K+ NP + + + EA+E + L +D+ +
Sbjct: 241 SESAVDWNYLLKTSDDLLSVDELKLKYSNPDLIKNIERE-EEAEETSDDE-PLSSEDEEN 298
Query: 680 DDESSITRSEDTDTPEPKSTEKSSV 754
+DE IT E+++ + K ++K+ V
Sbjct: 299 EDE-DIT--EESNLRKRKVSDKTRV 320
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 27.5 bits (58), Expect = 4.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 825 LKTKNQIRLTNFNNFNYVCNDIIRGQ 902
LK KN + ++ NNF + D++R Q
Sbjct: 271 LKAKNMLNASSTNNFTIIQRDVVRQQ 296
>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 251
Score = 27.5 bits (58), Expect = 4.0
Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = +2
Query: 647 KCSLYCQDQSSDDESSITRSEDT-DTPEPKSTEKSS 751
K S + ++SS+DESS++ ED + EP+ + +S+
Sbjct: 3 KSSEFVNEESSEDESSVSSIEDQHSSKEPEQSVESN 38
>SPCC622.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 140
Score = 26.6 bits (56), Expect = 7.0
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = -2
Query: 346 IAGVVAIKTSSYLCQLLFIFFVSLNIYQGQRYDGFEVWIMFRSFWISTFALTVSTHAF 173
+A V KT L LFI F + + ++GF ++F F+++ L VS F
Sbjct: 22 VANDVFKKTQWLLYVFLFIIFANCVVDVKYYFEGFSHSLLFVYFFLTLIILLVSFMGF 79
>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 396
Score = 26.6 bits (56), Expect = 7.0
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -1
Query: 662 NKDYISSSQFLELLQTLPSIVQHSEGFQT**PAILVYMSHQHNQQIQTS 516
NKDY+ + ELL PS ++ E P + Y+S ++++ S
Sbjct: 49 NKDYVGQQEEEELLYDQPSYIEEEED-----PDLEAYLSDLEREELEHS 92
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 272 IQTHEEDEEELAKIRARLYRYD 337
++ HE+ EEL KI A LY+ D
Sbjct: 75 LENHEQSFEELEKITASLYQPD 96
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 26.2 bits (55), Expect = 9.2
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +2
Query: 185 RNSESESGDPEATEHDPHFEPIVSLPLVDIQTHEEDEEELAKIRARLYRYDTGDHEWKER 364
+ S+ ES + +++ E + L + HEE+E+E + I R + DH+ +R
Sbjct: 175 KESDFESEEKATNDNNGLIETNHNSKLEESSEHEEEEDEESNIE----RTEDSDHQIPQR 230
Query: 365 G 367
G
Sbjct: 231 G 231
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,946,027
Number of Sequences: 5004
Number of extensions: 79481
Number of successful extensions: 301
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 661404424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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