Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP18_F_A02
(1220 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0633 + 16416913-16417009,16417976-16418060,16418398-164185... 118 1e-26
03_02_0648 - 10157911-10158104,10159621-10159789,10159897-101599... 102 7e-22
05_03_0628 - 16367841-16369259 40 0.005
01_06_0932 - 33147656-33148098,33148631-33148675,33148815-331489... 33 0.60
11_01_0199 + 1563483-1563572,1563673-1563852,1564091-1564402,156... 30 4.2
06_01_0353 + 2545995-2546208,2546362-2546492,2546846-2546929,254... 30 4.2
09_01_0087 + 1245890-1246565,1247409-1247484,1247774-1247893,124... 29 5.6
12_02_0750 + 22764481-22764771,22764871-22765383,22765470-227656... 29 7.4
12_02_0002 + 12119832-12120003,12120620-12120866,12121011-121210... 29 9.8
05_01_0414 + 3262886-3262957,3264517-3264597,3265115-3265214,326... 29 9.8
>05_03_0633 +
16416913-16417009,16417976-16418060,16418398-16418551,
16418808-16419023,16419105-16419241,16419317-16419408,
16419622-16419804,16421722-16421819,16422021-16422070,
16424605-16424756,16424944-16425069,16426315-16426523
Length = 532
Score = 118 bits (283), Expect = 1e-26
Identities = 64/149 (42%), Positives = 96/149 (64%), Gaps = 6/149 (4%)
Frame = +2
Query: 314 RARLYRYDTGDHEWKERGTGDVKLLRHKLNNTVRVVMRRDKTLKVCANHFITPDIRMNVH 493
+A+LYR+D ++WKERGTG VKLL+HK N VR+VMR+ KTLK+CANH + +M H
Sbjct: 372 KAKLYRFDKEGNQWKERGTGTVKLLKHKENGKVRLVMRQAKTLKICANHLVASTTKMQEH 431
Query: 494 CGSDRAFNWSVFADYADETCKQELLAIKFGNPQNAELWKAKFAEAQE-IVRTKCSLYCQD 670
GSD++ W AD+AD K+E+ AI+FG+ +N + +K E E + +T+ +D
Sbjct: 432 AGSDKSCVWHA-ADFADGELKEEMFAIRFGSVENCKKFKDLVEEISESLAKTEGKETEED 490
Query: 671 QSSD---DESSIT--RSEDTDTPEPKSTE 742
S+ ++ S+T +SE+ T E +STE
Sbjct: 491 SSAAGLLEKLSVTEKKSEEVATKE-ESTE 518
>03_02_0648 -
10157911-10158104,10159621-10159789,10159897-10159993,
10160089-10160246
Length = 205
Score = 102 bits (244), Expect = 7e-22
Identities = 63/197 (31%), Positives = 100/197 (50%)
Frame = +2
Query: 155 MSSPCEESVGRNSESESGDPEATEHDPHFEPIVSLPLVDIQTHEEDEEELAKIRARLYRY 334
M+ P E + + E + PIV L V + T EEDEE L ++++LYR+
Sbjct: 1 MADPAEHREEEEEAAAAAAGEDEDTGAQVAPIVKLEEVAVTTGEEDEEVLLDMKSKLYRF 60
Query: 335 DTGDHEWKERGTGDVKLLRHKLNNTVRVVMRRDKTLKVCANHFITPDIRMNVHCGSDRAF 514
D ++WKERGTG VKLL+HK + V R D + VCA + +M H GSD++
Sbjct: 61 DKEGNQWKERGTGTVKLLKHKETGKMDGV-RLDWVMFVCA---VATTTKMQEHAGSDKSC 116
Query: 515 NWSVFADYADETCKQELLAIKFGNPQNAELWKAKFAEAQEIVRTKCSLYCQDQSSDDESS 694
W D+AD K+E+ AI+FG+ +N + ++ E E + K ++ S
Sbjct: 117 VWHAL-DFADGELKEEMFAIRFGSVENCKKFREMVEEIAE-QQGKNEEKENEEVSSTAGL 174
Query: 695 ITRSEDTDTPEPKSTEK 745
+ + T+T + ++ EK
Sbjct: 175 VEKLSVTETKKEENAEK 191
>05_03_0628 - 16367841-16369259
Length = 472
Score = 39.5 bits (88), Expect = 0.005
Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 1/147 (0%)
Frame = +2
Query: 176 SVGRNSESESGDPEATEHDPHFEPIVSLPLVDIQTHEEDEEELAKIRARLYRYDTGDHEW 355
S+G ++ S AT + + ++P ++T EE+E+ + + LY Y G W
Sbjct: 306 SIGASNNGSSSPALATSAEAPKK--FAMPEGPVETGEENEKAIFTADSALYEYLDGG--W 361
Query: 356 KERGTGDVKL-LRHKLNNTVRVVMRRDKTLKVCANHFITPDIRMNVHCGSDRAFNWSVFA 532
KERG G++KL + R+VMR ++ N + D M++ + ++
Sbjct: 362 KERGKGELKLNIPVSGGERSRLVMRTKGNYRLVLNASLYED--MSLKDMDKKGVTFACMN 419
Query: 533 DYADETCKQELLAIKFGNPQNAELWKA 613
D A+KF + E +KA
Sbjct: 420 SIGDSQSGLATFALKFRDTSIREEFKA 446
>01_06_0932 -
33147656-33148098,33148631-33148675,33148815-33148945,
33149192-33149817
Length = 414
Score = 32.7 bits (71), Expect = 0.60
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -2
Query: 787 VCLIIFVRFFIY*RLFSTLWFRCVSILTSSYTAFI 683
+ ++ FF+Y LFS++WF+ +L+ +Y F+
Sbjct: 356 IAIVSSTGFFLYLSLFSSVWFKVYVLLSCAYLTFV 390
>11_01_0199 +
1563483-1563572,1563673-1563852,1564091-1564402,
1564753-1564800,1565205-1565438,1565632-1566219
Length = 483
Score = 29.9 bits (64), Expect = 4.2
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -2
Query: 328 IKTSSYLCQLLFIFFVSLNIYQGQRYDGFEVWIMFRSFWISTFALTVST 182
+ TS++LC ++FI F +N+Y + DG +W R S F L + T
Sbjct: 220 VATSTFLCIIVFI-FSWVNVYYERGDDGGSIWKALRKETYS-FVLIIYT 266
>06_01_0353 +
2545995-2546208,2546362-2546492,2546846-2546929,
2546972-2547316,2547327-2547582,2547683-2547879
Length = 408
Score = 29.9 bits (64), Expect = 4.2
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = +2
Query: 302 LAKIRARLYRYDTGDHEWKERGTGDVKLLRHKLNNTVRVVMRRDKTLKVCANHFITP 472
L + A + Y G ER GD + +KLN TV + ++ LK+ TP
Sbjct: 276 LGCLPATIRLYGKGRSGCVERLNGDAETFNNKLNITVEALAKKHSDLKIAIFDIYTP 332
>09_01_0087 +
1245890-1246565,1247409-1247484,1247774-1247893,
1248927-1249002,1250767-1250835,1251019-1251099,
1251298-1251369,1251600-1251692,1251904-1252083,
1252558-1252641,1252729-1252872,1253089-1253178,
1255982-1256064,1256140-1256421,1256722-1256959,
1258307-1258957
Length = 1004
Score = 29.5 bits (63), Expect = 5.6
Identities = 18/64 (28%), Positives = 38/64 (59%)
Frame = +2
Query: 197 SESGDPEATEHDPHFEPIVSLPLVDIQTHEEDEEELAKIRARLYRYDTGDHEWKERGTGD 376
+++G+ EA+ + + S+ L ++Q E + +LA+ +L T +++ +RG+GD
Sbjct: 130 ADAGELEASVLGARKQVLPSVGLQEMQRISEGKRQLAE---KLMAQYTVEYDMVKRGSGD 186
Query: 377 VKLL 388
+KLL
Sbjct: 187 LKLL 190
>12_02_0750 +
22764481-22764771,22764871-22765383,22765470-22765601,
22765731-22766108
Length = 437
Score = 29.1 bits (62), Expect = 7.4
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 78 LSCLNFNLFAIIYNKTQVLHTCKFTECRLHVKKAWVETVRAKVEI 212
LS LNF F ++ QVL KF CR W++T ++++
Sbjct: 347 LSDLNFIKFFVL--NAQVLECIKFVACRDKCDAKWIKTQHQRLQL 389
>12_02_0002 +
12119832-12120003,12120620-12120866,12121011-12121050,
12121584-12121676,12124850-12124928,12124973-12125019,
12126178-12126266,12126353-12126424,12126617-12126710,
12127167-12127206,12127321-12127445,12130472-12130615,
12131510-12131740
Length = 490
Score = 28.7 bits (61), Expect = 9.8
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Frame = +2
Query: 143 QIYRMSSPCEESVGRNSESESGDPEATEHDPHFEPIVSLPLVDIQTHEEDEEELAKIRAR 322
Q++ SPC S+GR P A D + IV + + E D + ++
Sbjct: 42 QVFGFISPCVFSIGRAVACIEASPTAEYTDAGLQDIVQIEVDPAAAAEIDAKLTVAVQIE 101
Query: 323 LYRY----DTGDHEWK------ERGTGD 376
+ D G+ WK ERG GD
Sbjct: 102 VVVVVGGDDDGEETWKQGRWGVERGCGD 129
>05_01_0414 +
3262886-3262957,3264517-3264597,3265115-3265214,
3265473-3265522,3265581-3265671,3266636-3266715,
3266940-3267005,3267761-3267860,3267934-3268011,
3268165-3268232,3268305-3268373,3268485-3268562,
3269561-3269631,3270632-3270709,3270808-3270913,
3271475-3271579,3272256-3272387,3272464-3272571,
3272655-3272764,3272868-3272963,3273155-3273617
Length = 733
Score = 28.7 bits (61), Expect = 9.8
Identities = 16/67 (23%), Positives = 33/67 (49%)
Frame = +2
Query: 275 QTHEEDEEELAKIRARLYRYDTGDHEWKERGTGDVKLLRHKLNNTVRVVMRRDKTLKVCA 454
Q +D +++ R ++YR T D +W ++GTG V + + + + + + ++
Sbjct: 12 QAGPDDAVQISMQRVKVYRL-TDDGKWDDQGTGHVTIDYIEGSREIALTVVDEEDSDTLL 70
Query: 455 NHFITPD 475
H IT D
Sbjct: 71 LHHITSD 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,178,552
Number of Sequences: 37544
Number of extensions: 466147
Number of successful extensions: 1277
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3747967944
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -