Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_P24
(920 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 29 0.93
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 28 1.6
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 28 2.1
SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae Q0... 27 3.7
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 27 4.9
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 27 4.9
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 26 6.5
SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces ... 26 6.5
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 26 8.6
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 29.1 bits (62), Expect = 0.93
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 372 CTCISNFVKIRESKCDQYSFKPLRSETLMK 283
C ++ + S+C +Y FKPL +E ++K
Sbjct: 160 CNYMTRIIDPLSSRCSKYRFKPLDNENMVK 189
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = -3
Query: 285 KCIICSIILSTLKPLSLSAFKSLSNAFRVLAKPLNNKYSLT---NSSTNC 145
KC++C+IIL PL + +++ NA + +NK LT N T C
Sbjct: 109 KCLVCNIILDIQDPLLSLSLEAMKNATKA-----SNKSQLTAWENELTTC 153
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 419 VTAAQNTSLIRNEKITDFFNKMLPELQGQNEWKEWFTFPYIQKPE--ENPSF 568
V+ ++T ++ +F LP+++ EW +WF F + + E +NP F
Sbjct: 27 VSKKEDTEPEVRDEAKEFLLSQLPQVEVP-EWAQWFDFSKVHEIEKKQNPEF 77
>SPMIT.09 |atp8||F0-ATPase subunit 8; similar to S. cerevisiae
Q0080|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 48
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = -1
Query: 491 LATFY*RNLLSFHFLLNWYSVQLSLSTVYI 402
L FY N+LSF FL+ ++V L +S+VY+
Sbjct: 4 LVPFYFINILSFGFLI--FTVLLYISSVYV 31
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 26.6 bits (56), Expect = 4.9
Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = -3
Query: 597 NSAALVKYKLNEGFSSGFWM*GNVNHSFHSFCPCNSGNILLKKSVIFSFLIKLVFCAAVT 418
N + VK + E F++GF + G ++HS + N +L S +F ++K + V
Sbjct: 512 NRKSNVKIEYTEDFATGFAISGEISHSIN-----NLEFVLYSLSSLFLMMLKWFRLSHVL 566
Query: 417 KYS--LYKLYSN 388
++ + LY N
Sbjct: 567 RFERLAFLLYEN 578
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 26.6 bits (56), Expect = 4.9
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 167 REYLLFRGFASTLKAFDNDLKADKDKGFRVDKIIEQI-MHFINVSDLNGLKEYWSHLDSL 343
RE LL GF ++AFD+ + + GFR + I E I HF +V + +Y S + SL
Sbjct: 854 REILLENGFQKFVQAFDDMESSREGLGFR-ELIPEDIRAHFEDVGLPGDIADY-SPISSL 911
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 6.5
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Frame = +2
Query: 281 HFINVSDLNGLKEYWSHLDSLIFTKLEIHV-QPAIRKLEYSLYKLYLVTAAQNTSLIRN- 454
H IN++D ++ + S + +E+ + Q A R +E L A ++ N
Sbjct: 218 HSINLNDAETMQRHLDMRFSQLNVAVELELWQEAFRSIEDIHSLLTFSKRAPAAVMLGNY 277
Query: 455 -EKITDFFNKMLPELQGQNEWKEWFTFPYIQKP 550
K+ F L W +FTF +QKP
Sbjct: 278 YRKLIKIFLVCDNYLLHAAAWNRYFTFTNVQKP 310
>SPCC1259.12c |||Ran GTPase binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 486
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 146 QFVDELVREYLLFRGFASTLKAF 214
+F++EL+ +LL GF T K F
Sbjct: 266 EFLNELISSFLLNNGFVETAKKF 288
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.8 bits (54), Expect = 8.6
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Frame = +2
Query: 290 NVSDLNGLKEYWSHLDSLIFTKLEIHVQPAIRKLEYSLYKLYLVT---AAQNTSLIRNEK 460
N S + +K S++ S I H Q + + ++ K +L+ + + L N+
Sbjct: 250 NTSSIFQVKNEMSNIKSAISEGYIAHDQQSKKVSVQNIKKEFLIPFEFSLEGGFLNYNKT 309
Query: 461 ITDFFNKMLPELQGQNEWKEWFTFPYIQK 547
++ + K+L E + + K WFTF + K
Sbjct: 310 FSNLY-KVLSETEKTRDSKVWFTFRLVLK 337
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,067,293
Number of Sequences: 5004
Number of extensions: 57928
Number of successful extensions: 187
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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