Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_P24
         (920 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40061-4|AAA81151.3|  239|Caenorhabditis elegans Hypothetical pr...    85   5e-17
L16560-5|AAA27996.1|  443|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AC025716-19|AAK39602.2|  549|Caenorhabditis elegans Hypothetical...    29   4.7  
U80443-1|AAB37672.1|  186|Caenorhabditis elegans Hypothetical pr...    24   5.9  
U66217-1|AAB07466.1|   86|Caenorhabditis elegans ZK563.5 protein.      29   6.2  
AC006644-4|AAF39835.1| 1030|Caenorhabditis elegans Hypothetical ...    29   6.2  

>U40061-4|AAA81151.3|  239|Caenorhabditis elegans Hypothetical
           protein ZK563.5 protein.
          Length = 239

 Score = 85.4 bits (202), Expect = 5e-17
 Identities = 45/152 (29%), Positives = 76/152 (50%), Gaps = 1/152 (0%)
 Frame = +2

Query: 134 MAHVQ-FVDELVREYLLFRGFASTLKAFDNDLKADKDKGFRVDKIIEQIMHFINVSDLNG 310
           M+HV    DE+VR YL  +   ++LKAFD +    K+  ++VD+ I+++   I+  D++ 
Sbjct: 1   MSHVSNSTDEVVRNYLAAKSMVTSLKAFDQESSFAKEANYQVDRCIDEMTDAIDKHDVDT 60

Query: 311 LKEYWSHLDSLIFTKLEIHVQPAIRKLEYSLYKLYLVTAAQNTSLIRNEKITDFFNKMLP 490
           L   W   ++ +F  L+       +  E S Y+L+LV   Q  ++    K  +FF KM  
Sbjct: 61  LCAMWESWNARVFHSLDTEGIKQAQCYEASAYRLFLVRCVQKKNI---SKCNEFFRKMSS 117

Query: 491 ELQGQNEWKEWFTFPYIQKPEENPSFSLYFTR 586
                 +W +WF FPY    ++   F  YF +
Sbjct: 118 LTLNNPQWADWFAFPYNHHAKDTEPFRKYFDK 149


>L16560-5|AAA27996.1|  443|Caenorhabditis elegans Hypothetical
           protein D2007.5 protein.
          Length = 443

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +2

Query: 191 FASTLKAFDNDLKADKDKGFRVDKIIEQIMHFINVS 298
           F    + F+ND+ +D  KG +  KI E +  F N+S
Sbjct: 142 FVIMYRVFENDISSDMGKGKKTRKIGELVSKFGNIS 177


>AC025716-19|AAK39602.2|  549|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.17 protein.
          Length = 549

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 446 IRNEKITDFFNKMLPELQGQNEWKEWFTFPYIQKPEENPSFS 571
           I   K TDFF+K + +   +N+    F+F  IQK E+   FS
Sbjct: 425 IFQRKKTDFFSKKIKKKLSKNDKFLVFSFKTIQKKEKTAFFS 466


>U80443-1|AAB37672.1|  186|Caenorhabditis elegans Hypothetical
           protein C24A11.2 protein.
          Length = 186

 Score = 24.2 bits (50), Expect(2) = 5.9
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -3

Query: 357 NFVKIRESKCDQYSFKPLRSETLMKCIICSIILSTLKPLSLSAFKSLSNAF 205
           N +K+R S  D+ S     SET  K  +C I  S L PL       ++N +
Sbjct: 97  NNIKMRNSVGDEES-----SETKCKKKVCGIFQSWLHPLRNREIDRMNNIY 142



 Score = 23.0 bits (47), Expect(2) = 5.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 513 HSFCPCNSGNILLKKSV 463
           HSF P N  NI ++ SV
Sbjct: 89  HSFPPINENNIKMRNSV 105


>U66217-1|AAB07466.1|   86|Caenorhabditis elegans ZK563.5 protein.
          Length = 86

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 509 EWKEWFTFPYIQKPEENPSFSLYFTR 586
           +W EWF FP+    ++   F  YF +
Sbjct: 4   QWAEWFXFPHNHHAKDTEPFXKYFDK 29


>AC006644-4|AAF39835.1| 1030|Caenorhabditis elegans Hypothetical
           protein F55A3.3 protein.
          Length = 1030

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +2

Query: 122 LGQNMAHVQFVDELVREYLLFRGFASTLKAFDNDLKADKDKGFRVDKIIEQIMH 283
           L QN  + +  D L+R  ++ +    +L+A  N  +    +G R+D +   I H
Sbjct: 653 LSQNKLNPKLKDLLIRPNIIQKRITGSLEAHTNGFRYTSLRGDRIDVLYNNIKH 706


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,812,232
Number of Sequences: 27780
Number of extensions: 329444
Number of successful extensions: 1172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)