Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP17_F_P22
(911 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 39 9e-04
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 39 0.001
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 39 0.001
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 38 0.003
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 36 0.011
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 36 0.011
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 34 0.032
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 32 0.13
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 30 0.52
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 29 0.69
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 28 2.1
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 27 2.8
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 27 3.7
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 27 3.7
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||... 27 3.7
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 4.9
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 27 4.9
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 26 6.5
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 26 6.5
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 26 8.5
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 39.1 bits (87), Expect = 9e-04
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3
Query: 633 MIIIGETGSGKTTQIPQMIHEQRLEGTGSIAV 728
++++GETGSGK+TQIPQ ++E G +A+
Sbjct: 115 IVVVGETGSGKSTQIPQFLNECPYAQEGCVAI 146
Score = 28.3 bits (60), Expect = 1.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 757 IALRVAAEMNTEVGNXVGYSVR 822
+A RVAAE +G VGYS+R
Sbjct: 157 LAKRVAAEQGCRLGEQVGYSIR 178
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +3
Query: 603 VIRRNKKKHTMIIIGETGSGKTTQIPQMIHEQRLEGTGSI 722
VIR N+ +I++GETGSGKTTQ+ Q ++E G I
Sbjct: 504 VIRDNQ---VLIVVGETGSGKTTQLAQFLYEDGYHRNGMI 540
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 757 IALRVAAEMNTEVGNXVGYSVRLK 828
+A RV+ EM +G+ VGYS+R +
Sbjct: 553 VAKRVSEEMGVRLGSTVGYSIRFE 576
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 38.7 bits (86), Expect = 0.001
Identities = 14/21 (66%), Positives = 19/21 (90%)
Frame = +3
Query: 633 MIIIGETGSGKTTQIPQMIHE 695
++I+ ETGSGKTTQ+PQ +HE
Sbjct: 437 LLIVAETGSGKTTQLPQFLHE 457
Score = 30.3 bits (65), Expect = 0.40
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 757 IALRVAAEMNTEVGNXVGYSVRLK 828
+A RVA EM+ +G VGYS+R +
Sbjct: 480 VAARVAKEMDVRLGQEVGYSIRFE 503
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 37.5 bits (83), Expect = 0.003
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +3
Query: 597 RQVIRRNKKKHTMIIIGETGSGKTTQIPQMIHEQ 698
+Q + K ++++GETGSGKTTQI Q + E+
Sbjct: 517 KQFLEAVSKNQILVLLGETGSGKTTQITQYLAEE 550
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 757 IALRVAAEMNTEVGNXVGYSVRLK 828
+A RVA E+ VG VGY++R +
Sbjct: 572 VAKRVAEEVGCRVGEEVGYTIRFE 595
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 35.5 bits (78), Expect = 0.011
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +3
Query: 633 MIIIGETGSGKTTQIPQMI 689
++ +GETGSGKTTQIPQ +
Sbjct: 94 IVFVGETGSGKTTQIPQFV 112
Score = 29.1 bits (62), Expect = 0.92
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +1
Query: 757 IALRVAAEMNTEVGNXVGYSVRLK 828
+A RVA EM+ ++G VGY++R +
Sbjct: 138 VAKRVADEMDVDLGEEVGYNIRFE 161
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 35.5 bits (78), Expect = 0.011
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +3
Query: 600 QVIRRNKKKHTMIIIGETGSGKTTQIPQMIHE 695
Q++ ++ I++G TG GKTTQIPQ ++E
Sbjct: 33 QLLYAVEQNQITIVLGHTGCGKTTQIPQFLYE 64
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 33.9 bits (74), Expect = 0.032
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +3
Query: 633 MIIIGETGSGKTTQIPQMIHE 695
+II G TGSGKTTQ+PQ + E
Sbjct: 417 VIICGATGSGKTTQLPQFLFE 437
Score = 26.2 bits (55), Expect = 6.5
Identities = 13/59 (22%), Positives = 29/59 (49%)
Frame = +1
Query: 451 KKVKLLSDSISNCLQNGHEVSKNIETHVVKKNSDDLQEARRKLPVFMVRGRLLEEIRKN 627
+K+K+ + + + E+ T+ + ++QE+R LP+ R++E+I N
Sbjct: 357 RKLKMREEDVEPTADD-IEIKGRKTTYTIINRPPEIQESRLALPIVAEEQRIMEQIFAN 414
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 31.9 bits (69), Expect = 0.13
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 597 RQVIRRNKKKHTMIIIGETGSGKTTQIPQMIHEQRL 704
R+++ + ++I GETGSGK+TQ+ Q I + L
Sbjct: 584 RKIMDAIQHSQVVVISGETGSGKSTQVVQFILDHYL 619
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +1
Query: 757 IALRVAAEMNTEVGNXVGYSV 819
+A RVA E +T VG VGYSV
Sbjct: 642 LAERVAFERDTTVGKEVGYSV 662
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 29.9 bits (64), Expect = 0.52
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 630 CVFSYFF**PASNHKYRQFPSSFLQII*IFFNNMRFYVFRNFM 502
C+F Y P + Y FP+ FLQ+I F N + F+NF+
Sbjct: 498 CIFFYIQSSPPFYYGYALFPTIFLQLIHSIFPNTKL-GFKNFL 539
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 29.5 bits (63), Expect = 0.69
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 633 MIIIGETGSGKTTQIPQMIHEQRLEGTGSIAV 728
+II G+TG GK+TQIP + E + ++ +
Sbjct: 650 LIISGDTGCGKSTQIPAFLLENSTKNGKAVKI 681
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/29 (44%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Frame = +3
Query: 618 KKKHTM--IIIGETGSGKTTQIPQMIHEQ 698
KKKH + II+GE+G GKT+ + Q ++ +
Sbjct: 4 KKKHLLKVIILGESGVGKTSIMNQYVNRK 32
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 612 RNKKKHTMIIIGETGSGKTTQIPQM 686
+ KK +I++G GSGKTT + Q+
Sbjct: 4 KEKKPCAIIVVGMAGSGKTTFMQQL 28
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 27.1 bits (57), Expect = 3.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 600 QVIRRNKKKHTMIIIGETGSGKTT 671
+++ RN T+++ GE+G GKTT
Sbjct: 20 KIVSRNGVAFTLMLCGESGLGKTT 43
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 389 PIEQYFESILLFLDKLMLNYYGKVYV 312
P+E+ E FLD L + YYG + V
Sbjct: 454 PVEEIAEEFSRFLDTLGIEYYGNIPV 479
>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 331
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +3
Query: 597 RQVIRRNKKKHTMIIIGETGSGKTTQIPQMIHEQRLEGTGSI 722
R++IRR + + M++ G +GSGK+T I + ++ G +
Sbjct: 24 RKLIRRGFQFNVMVV-GPSGSGKSTLINTLFSAHLMDSKGRL 64
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 4.9
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +3
Query: 633 MIIIGETGSGKTTQI 677
++++GETG+GKTT I
Sbjct: 470 LLLVGETGTGKTTTI 484
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.6 bits (56), Expect = 4.9
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +3
Query: 615 NKKKHTMIIIGETGSGKTTQIPQMI 689
NK+ ++++ GE+G+GKT ++I
Sbjct: 160 NKENQSILVTGESGAGKTENTKRII 184
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.2 bits (55), Expect = 6.5
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +3
Query: 624 KHTMIIIGETGSGKTTQIPQMIHEQRLEGTGSIAVLSLVE*LLFN 758
K + ++G G+GKTT I ++I E+ TGS+ + LFN
Sbjct: 620 KSRVALVGPNGAGKTTLI-KLILEKVQPSTGSVVRHHGLRLALFN 663
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 26.2 bits (55), Expect = 6.5
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +1
Query: 469 SDSISNCLQNGHEVSKNIETHVVKKNSDD--LQEARRKLPVFMVR 597
S+S+SN H S+N TH +SDD +E R LP +R
Sbjct: 696 SNSLSNKPGFAHSESRNYHTHDEDNSSDDNHKREDRGHLPAQYLR 740
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 25.8 bits (54), Expect = 8.5
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 582 CIYG*RQVIRRNKKKHTMIIIGETGSGKTTQIPQMIHEQRL 704
C+ V RNK I+IG TGSGK++ I ++ E L
Sbjct: 630 CLRDLNIVFPRNKLS---IVIGPTGSGKSSLISALLGELSL 667
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,071,182
Number of Sequences: 5004
Number of extensions: 59504
Number of successful extensions: 201
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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