Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_P21
         (924 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    64   6e-09
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    56   1e-06
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    54   7e-06
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    42   0.029
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    41   0.051
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    38   0.48 
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    38   0.48 
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    37   0.63 
UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1; Lentisp...    34   4.5  

>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 63.7 bits (148), Expect = 6e-09
 Identities = 30/43 (69%), Positives = 30/43 (69%)
 Frame = -1

Query: 567 PFAGLXFTCXFLRYPLILWITVLPPLSEXIPLAAAERPSAASQ 439
           P      TC F  YPLILWITVLPPLSE  PLAA ERPS ASQ
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERPSVASQ 61


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 56.4 bits (130), Expect = 1e-06
 Identities = 31/57 (54%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +1

Query: 367 CINESANARGEAVCVLGALPVPRSLTRCARSFGCGERYXL-TQRR*YGYPQNQGITQ 534
           CI + A AR EAV VL ALP+ RS TRC RS GCG      +  R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 53.6 bits (123), Expect = 7e-06
 Identities = 43/113 (38%), Positives = 50/113 (44%)
 Frame = +1

Query: 391 RGEAVCVLGALPVPRSLTRCARSFGCGERYXLTQRR*YGYPQNQGITQEXTCEXKASKRX 570
           R   +C  G +P+PRSLTR ARSFGCGERY LT           G   E T +  + +  
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT--------DGDGNFLEDTRKTLSKEEI 77

Query: 571 XTVKGPRCWRXPIGSAPLXEXHKNRXSIQRWRXPTGL*XXPGRFPXXNPPRCA 729
                PR  R  IGSAPL    K+   I            P RFP    P CA
Sbjct: 78  R----PRRSRFSIGSAPLTSIAKSDAQISGGETRQDY-KDPRRFPLV-APSCA 124


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 41.5 bits (93), Expect = 0.029
 Identities = 20/24 (83%), Positives = 21/24 (87%)
 Frame = -2

Query: 437 ERGTGRAPNTQTASPRALADSLMQ 366
           +R T  APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 40.7 bits (91), Expect = 0.051
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +2

Query: 365 SALMNRPTRGERRFAYW 415
           +ALMNRPTRGERRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 37.5 bits (83), Expect = 0.48
 Identities = 35/98 (35%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
 Frame = +2

Query: 626 TSXTKIDXQFKGGEXRRDYKXXQXVSPXXTPLGALXXXRPLPLXRXXCPAFXPFS-GKRW 802
           TS TKID Q +GGE R+DYK  +   P   P  AL   RP  L    CP   PFS  + W
Sbjct: 24  TSITKIDAQVRGGETRQDYKDTRRF-PLEAPSCAL-LFRPCRLP-DTCP---PFSLREAW 77

Query: 803 RLXXXPHXGXXSPXXXLGPSXPXPGXCXPXXPPVSPPP 916
           R       G         PS        P  P  +P P
Sbjct: 78  RFLIAHAVGISVRCRSFAPSWAVCTN-PPFSPTAAPYP 114


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 37.5 bits (83), Expect = 0.48
 Identities = 16/19 (84%), Positives = 16/19 (84%)
 Frame = +2

Query: 170 DPDMIRYIDEXGQXTTXMQ 226
           DPDMIRYIDE GQ TT MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 37.1 bits (82), Expect = 0.63
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = +3

Query: 492 KAVIRLSTESGDNAGXNM 545
           KAVIRLSTESGDNAG NM
Sbjct: 42  KAVIRLSTESGDNAGKNM 59


>UniRef50_A6DNS7 Cluster: Probable ECF sigma factor; n=1;
           Lentisphaera araneosa HTCC2155|Rep: Probable ECF sigma
           factor - Lentisphaera araneosa HTCC2155
          Length = 201

 Score = 34.3 bits (75), Expect = 4.5
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +2

Query: 248 EICDAIALFVXIISCNKQVNNNNCIHFMFQVQGEVWEVFSALMNRPTRGERRFAYW 415
           +  DA   F+ I   N  +N+++C   + +V  +VWE  +     P RG  +F YW
Sbjct: 32  DFSDAYRRFIYIALRNNGLNHHDCEEVVQRVMIKVWEKIARFKYNPGRG--KFRYW 85


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 669,055,325
Number of Sequences: 1657284
Number of extensions: 10984161
Number of successful extensions: 29854
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 23367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28687
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 84851082477
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)