Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_P21
         (924 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038613-8|AAL02515.2|  309|Caenorhabditis elegans Human hnrnp a...    31   1.2  
AF038613-6|ABB51186.1|  347|Caenorhabditis elegans Human hnrnp a...    31   1.2  
D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like prot...    29   3.6  
AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a...    29   3.6  
AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a...    29   3.6  
AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igca...    29   6.2  

>AF038613-8|AAL02515.2|  309|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform b protein.
          Length = 309

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
 Frame = -3

Query: 916 GGG*NGGGXGXTXPRXGXGRP*XXXWGXPXXVXXXXKAPPLXRKGX--KGGTGXPXKRQG 743
           GGG  GGG G    R G G       G               ++G   +GG G P ++QG
Sbjct: 183 GGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQG 242

Query: 742 SXXXERTEGGXXGG 701
                +  GG  GG
Sbjct: 243 GGGWGQQGGGGQGG 256


>AF038613-6|ABB51186.1|  347|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform d protein.
          Length = 347

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
 Frame = -3

Query: 916 GGG*NGGGXGXTXPRXGXGRP*XXXWGXPXXVXXXXKAPPLXRKGX--KGGTGXPXKRQG 743
           GGG  GGG G    R G G       G               ++G   +GG G P ++QG
Sbjct: 221 GGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNYGGGWGQQGGGGQGGWGGPQQQQG 280

Query: 742 SXXXERTEGGXXGG 701
                +  GG  GG
Sbjct: 281 GGGWGQQGGGGQGG 294


>D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like protein
           protein.
          Length = 346

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 22/73 (30%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
 Frame = -3

Query: 916 GGG*NGGGXGXTXPRXGXGRP*XXXWGXPXXVXXXXKAP-PLXRKGXKGGTGXPXKRQGS 740
           GGG  GGG G    R G G       G                  G +GG G P ++QG 
Sbjct: 221 GGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGG 280

Query: 739 XXXERTEGGXXGG 701
               +  GG  GG
Sbjct: 281 GGWGQQGGGGQGG 293


>AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform c protein.
          Length = 308

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 22/73 (30%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
 Frame = -3

Query: 916 GGG*NGGGXGXTXPRXGXGRP*XXXWGXPXXVXXXXKAP-PLXRKGXKGGTGXPXKRQGS 740
           GGG  GGG G    R G G       G                  G +GG G P ++QG 
Sbjct: 183 GGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGG 242

Query: 739 XXXERTEGGXXGG 701
               +  GG  GG
Sbjct: 243 GGWGQQGGGGQGG 255


>AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform a protein.
          Length = 346

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 22/73 (30%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
 Frame = -3

Query: 916 GGG*NGGGXGXTXPRXGXGRP*XXXWGXPXXVXXXXKAP-PLXRKGXKGGTGXPXKRQGS 740
           GGG  GGG G    R G G       G                  G +GG G P ++QG 
Sbjct: 221 GGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGG 280

Query: 739 XXXERTEGGXXGG 701
               +  GG  GG
Sbjct: 281 GGWGQQGGGGQGG 293


>AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igcam
            protein 4 protein.
          Length = 2325

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = -3

Query: 298  FIAAYNGYK*SNSITNF----TNKAFFSLHXSCGLSXLINVSYHVWIQLTLTKGRSAAAN 131
            +I  Y GY+      N     T++ +F  H   GL+  +   + VW + +  KG   +AN
Sbjct: 1807 YIVNYKGYRMQEEFKNEDQQRTSRNYFDTH---GLAEGVTYFFSVWAETSAGKGEQRSAN 1863

Query: 130  V 128
            V
Sbjct: 1864 V 1864


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,892,192
Number of Sequences: 27780
Number of extensions: 263564
Number of successful extensions: 680
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)