Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_P19
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po...    28   2.1  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   4.8  
SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces pomb...    26   8.5  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    26   8.5  

>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 218

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +3

Query: 378 RKVARQLSDKSIIDYNDFIRNLQNNEANDQQFFFVNGQIISAVSIEEICREIDD 539
           RKV + L +K +ID N +   +   EA++Q     +     A+S  +I + I++
Sbjct: 110 RKVLQSLHEKKVIDDNQYKDAMATVEAHEQASKSGDTSTSGAISKNDILKRIEE 163


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +3

Query: 330  LKKTTFDSAQLLKKVRRKVARQLSDKSIIDYNDFIRNLQ 446
            LK+T     +LLKK+  +  + +   SI+ Y  +IR+++
Sbjct: 1739 LKETVKKQEKLLKKLNLRQEQLIPRSSILVYESYIRDIE 1777


>SPAC3A12.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 214

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 21/79 (26%), Positives = 34/79 (43%)
 Frame = +3

Query: 99  IHKLTLL*NIRQSRASSHDVNVSTLEWVQNY*TWKPSCSVNEQWMKLEEDWKPVDLDEDR 278
           I  L  + N+R S+A+S           +N+    PS S+N +      DW  V + +D 
Sbjct: 136 IESLETVRNLRSSQANSQSTQPRDPIPTENFDVRTPSYSINYKKPVPAGDWVIVRVKDDV 195

Query: 279 TEEDNEPAMTTMLSALDLK 335
               N  +   +  ALDL+
Sbjct: 196 ARLYNSKSQ-LLAEALDLQ 213


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
 Frame = +3

Query: 321 ALD--LKKTTFDSAQLLKKVRRKVARQLSDKSIIDYNDFIRNLQNNEAN---DQQFFFVN 485
           ALD   KK    +  LLK+++ K       K   +++   R ++   A    D ++  + 
Sbjct: 617 ALDTLFKKLPTAAPVLLKRIKTKDQEWRRSKR--EWSKIWRQIEKKNAQAAFDDRYCRIE 674

Query: 486 GQIISAVSIEEICREIDDIFK 548
           G+    +S   I R+IDDI++
Sbjct: 675 GRDRRGLSYSRILRDIDDIYQ 695


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,558,263
Number of Sequences: 5004
Number of extensions: 42912
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)