Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_P19
         (906 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    27   0.31 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.8  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    23   3.8  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   3.8  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   3.8  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   3.8  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   6.7  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   8.8  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   8.8  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +3

Query: 168 TLEWVQNY*TWKPS--CSVNEQWMKLEEDWKP 257
           TL W  ++ +WKPS    +N  ++K ++ W P
Sbjct: 96  TLMWTDSHLSWKPSDFDGINYIYVKSDDIWVP 127


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -2

Query: 344 CSFLQVQSAEHCRHSRFVVFLCP 276
           C  + VQS   C   R   +LCP
Sbjct: 183 CKCIYVQSINLCMAGRLFGYLCP 205


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +3

Query: 228 WMKLEEDWKPVDLDEDRTEEDNEPAMTTMLS 320
           + K  E WK    D    E   EP + + LS
Sbjct: 56  YRKYRETWKERSRDRTERERSREPKIISSLS 86


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +3

Query: 228 WMKLEEDWKPVDLDEDRTEEDNEPAMTTMLS 320
           + K  E WK    D    E   EP + + LS
Sbjct: 56  YRKYRETWKERSRDRTERERSREPKIISSLS 86


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +3

Query: 228 WMKLEEDWKPVDLDEDRTEEDNEPAMTTMLS 320
           + K  E WK    D    E   EP + + LS
Sbjct: 56  YRKYRETWKERSRDRTERERSREPKIISSLS 86


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +3

Query: 228 WMKLEEDWKPVDLDEDRTEEDNEPAMTTMLS 320
           + K  E WK    D    E   EP + + LS
Sbjct: 56  YRKYRETWKERSRDRTERERSREPKIISSLS 86


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 81  CSAVYNIHKLTLL*NIRQSRASSHDVNVST 170
           C    NI  LT    +RQ R  + D+N++T
Sbjct: 159 CPYTLNIFDLTSDKLLRQYRLRAEDINMNT 188


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +3

Query: 396 LSDKSIIDYNDFIRNLQNNEANDQQFFFVNGQIISAVSIEEICREIDDIFKSIDRLAXAA 575
           L+DK + +  D I    ++       FF+          E++ +E+D+IF   DR A   
Sbjct: 333 LTDKEVKEQVDTIMFEGHDTTASGSSFFLAVMGCHPDIQEKVIQELDEIFGDSDRPATFQ 392

Query: 576 ST 581
            T
Sbjct: 393 DT 394


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 387 ARQLSDKSIIDYNDFIRNLQNN 452
           A++L D  + +YN  IR + NN
Sbjct: 21  AKRLYDDLLSNYNRLIRPVSNN 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,691
Number of Sequences: 438
Number of extensions: 3094
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)