Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP17_F_P18
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   2.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   6.5  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   8.6  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   8.6  

>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 853 IDQKNXTSAASRPTPGVDRDLXYHYPRQTCQFSI 752
           I +   T+  +   PGV  D   H P+QT +F +
Sbjct: 260 IAESMKTARENPGPPGVPGDHGDHAPKQTVRFKV 293


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 647 LFFPVSLSVTTLTETIFPNVL 585
           +F PVS   TT+   I+P V+
Sbjct: 829 MFLPVSYMSTTMAGVIYPPVI 849


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 679 HNHQTLQNQSPFSFLFLYLSQH*QKQY 599
           H+HQ L  QSP+    +Y +   +K+Y
Sbjct: 77  HHHQVLYQQSPY---LMYENPDEEKRY 100


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 544 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 657
           L  D+ +      F+  GN ++     D  TG  RGFG
Sbjct: 143 LAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFG 180


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 544 LKQDIEEEDLREYFSTFGNIVSVSVVTDKETGKKRGFG 657
           L  D+ +      F+  GN ++     D  TG  RGFG
Sbjct: 143 LAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFG 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 211,996
Number of Sequences: 438
Number of extensions: 3904
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)